Factsheet for GSMUA_Achr4P02170_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P05080_001	Banana	cytosol	65.6	67.34
GSMUA_Achr9P13690_001	Banana	plasma membrane	62.56	61.9
GSMUA_Achr5P16400_001	Banana	cytosol	48.55	55.29
Os02t0152500-01	Rice	nucleus	52.21	45.79
CDY14184	Canola	cytosol	34.86	44.99
CDY29247	Canola	cytosol, nucleus, plastid	26.64	44.3
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	50.08	43.81
TraesCS6D01G113600.1	Wheat	nucleus	49.62	43.47
Zm00001d053875_P001	Maize	cytosol, plastid	50.23	43.42
KXG29488	Sorghum	nucleus	50.08	43.23
TraesCS6B01G151600.2	Wheat	nucleus	49.32	43.2
CDY59604	Canola	nucleus	26.33	42.72
TraesCS6A01G123400.1	Wheat	nucleus	48.71	42.67
Bra024456.1-P	Field mustard	nucleus	27.7	42.23
CDY51654	Canola	cytosol	34.25	41.9
VIT_11s0052g00830.t01	Wine grape	nucleus	45.51	40.51
KRH02856	Soybean	nucleus	44.9	40.03
KRH19033	Soybean	nucleus	44.44	39.67
Zm00001d015293_P015	Maize	nucleus, plastid	50.38	39.17
CDX72220	Canola	nucleus	37.14	39.04
CDX68633	Canola	nucleus	36.68	38.81
CDY03544	Canola	nucleus	36.83	38.78
GSMUA_Achr8P33580_001	Banana	plasma membrane	39.57	38.75
Bra010297.1-P	Field mustard	nucleus	37.14	38.12
CDY28168	Canola	nucleus	37.14	38.12
Bra011173.1-P	Field mustard	nucleus	36.99	37.97
Bra024097.1-P	Field mustard	cytosol	36.68	37.72
Bra006824.1-P	Field mustard	nucleus	27.85	37.5
GSMUA_Achr10P...	Banana	mitochondrion	12.02	37.44
CDY11872	Canola	mitochondrion	32.42	37.43
CDY42262	Canola	nucleus	31.96	37.3
Solyc07g018270.2.1	Tomato	cytosol	41.86	37.21
AT5G57380.1	Thale cress	nucleus	34.86	36.94
AT2G18880.1	Thale cress	nucleus	29.68	36.86
AT4G30200.2	Thale cress	nucleus	39.42	36.27
CDY47942	Canola	nucleus	31.05	36.23
Bra020445.1-P	Field mustard	nucleus	30.59	35.96
CDX88618	Canola	mitochondrion	31.35	35.4
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	43.38	34.76
TraesCS7A01G433000.1	Wheat	cytosol	42.77	34.35
GSMUA_Achr4P01640_001	Banana	nucleus	33.18	33.9
HORVU7Hr1G099250.1	Barley	cytosol	41.55	33.7
GSMUA_Achr10P...	Banana	extracellular	10.35	28.57
PGSC0003DMT400019884	Potato	cytosol	15.83	28.18

Protein Annotations

EnsemblPlants:GSMUA_Achr4P02170_001	EnsemblPlants:GSMUA_Achr4T02170_001	EnsemblPlantsGene:GSMUA_Achr4G02170_001	InterPro:Oberon_PHD	PANTHER:PTHR21736	PANTHER:PTHR21736:SF24
PFAM:PF07227	SEG:seg	UniParc:UPI0002952C18	UniProt:M0SKD4	MapMan:12.3.3.1.2.2	:

Description

Putative Protein VERNALIZATION INSENSITIVE 3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G02170_001]

Coordinates

chr4:+:1936604..1941141

Molecular Weight (calculated)

73520.0 Da

IEP (calculated)

5.310

GRAVY (calculated)

-0.476

Length

657 amino acids

Sequence
(BLAST)

001: MFTTTGFVLD PSKCSKLSIE EKRELIRELS KWPESAPEKL QTWSRRDLLE ILCAEIGKER KYTSLTKQKM IEYLFRVVSD KNSGEHAKDS DSDVEEALDN
101: IRYCQNSACR ATLNIQDAFC KRCSCCICRK YDDNKDPSLW LFCGSEAFSQ GDLCGLSCHL ECALKHERTG IMKSRQCTTR LDGSYYCTYC GKANDLLGCW
201: KKQLLIAKDA RRVDALCYRI SLSHKLLSLT EKYQSLHEIV DTARKKLEAE VGPIDDLSNM ARGIVNRLSV GAEVQRLCAH AVDLLDSMRG SSLSANSQLQ
301: QIGTVSSSFI KFEEILPTSL TVALDIEDNT PLAQELAGFT LWHRKTDNPE YPRKPSLSVF KPKKRLLLTE LIPATEYMFK VVGFSKMRNL YTWEVGVKTK
401: AISLDDSGDE SNTNSSACAD LNKLPEIDFD DCEKPQILET EKSFDHAQKD NSHQKSECKG SISGAEVLEP EDSHGHSDSA LDEEPNSTIP IESTNSMENN
501: QASDIPKSDN ESNTPVVNEM VIVPFGQSDP TLPATPPCRL ETGTEGSGSS SKKRGGGKFE GINIKDGSME GLYEYCVKVI RWLECEGHIE SNFRVKFLTW
601: FSLRATPQER RIVSVYVDTL IDDPPSLAGQ LVDTFLEAIC SKRPPPAPTG FCTNLWH

Best Arabidopsis Sequence Match ( AT4G30200.3 )
(BLAST)

001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDT ATTGSTKIRF EDVNATSLTV VLASNEIPSP PNIVHYSIWH RKVPEKDYPE
401: KSTCTLFIPN TRFVVSGLAP ASEYCFKVVS YSGTREMGVD EINVLTRSAE EGANCSSAVE RSVSPLTNCS TLSSNPSSVE AESNNDYIVP KKPSSKNEDN
501: NSPSVDESAA KRMKRTTDSD IVQIEKDVEQ IVLLDDEEQE AVLDKTESET PVVVTTKSLV GNRNSSDASL PITPFRSDEI KNRQARIEIS MKDNCNNGDH
601: SANGGTESGL EHCVKIIRQL ECSGHIDKNF RQKFLTWYSL RATSQEIRVV KIFIDTFIDD PMALAEQLID TFDDRVSIKR SAVGGSGASA VVPSGFCMKL
701: WH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.