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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY28168 Canola nucleus 94.69 94.69
Bra024097.1-P Field mustard cytosol 72.19 72.3
Bra010297.1-P Field mustard nucleus 71.25 71.25
AT4G30200.2 Thale cress nucleus 71.88 64.43
Bra024456.1-P Field mustard nucleus 39.53 58.7
VIT_11s0052g00830.t01 Wine grape nucleus 50.62 43.9
Solyc07g018270.2.1 Tomato cytosol 48.75 42.22
KRH02856 Soybean nucleus 48.28 41.93
KRH19033 Soybean nucleus 48.12 41.85
Bra020445.1-P Field mustard nucleus 36.25 41.5
Bra006824.1-P Field mustard nucleus 30.47 39.96
GSMUA_Achr5P16400_001 Banana cytosol 34.38 38.13
GSMUA_Achr3P05080_001 Banana cytosol 38.12 38.12
GSMUA_Achr9P13690_001 Banana plasma membrane 38.59 37.2
GSMUA_Achr4P02170_001 Banana cytosol 37.97 36.99
Os02t0152500-01 Rice nucleus 38.75 33.11
KXG29488 Sorghum nucleus 39.22 32.98
PGSC0003DMT400019884 Potato cytosol 18.91 32.79
Bra015040.1-P Field mustard cytosol 17.34 32.74
Zm00001d053875_P001 Maize cytosol, plastid 38.59 32.5
HORVU6Hr1G022770.6 Barley cytosol, nucleus, plastid 36.41 31.03
TraesCS6D01G113600.1 Wheat nucleus 36.09 30.8
TraesCS6A01G123400.1 Wheat nucleus 35.78 30.53
TraesCS6B01G151600.2 Wheat nucleus 35.78 30.53
Bra015039.1-P Field mustard nucleus 27.66 29.75
Zm00001d015293_P015 Maize nucleus, plastid 39.22 29.7
HORVU7Hr1G099250.1 Barley cytosol 36.56 28.89
TraesCS7D01G424600.1 Wheat cytosol, nucleus, plasma membrane 35.62 27.8
TraesCS7A01G433000.1 Wheat cytosol 34.69 27.14
Protein Annotations
EnsemblPlants:Bra011173.1EnsemblPlants:Bra011173.1-PEnsemblPlantsGene:Bra011173Gene3D:2.60.40.10GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:FN3_domInterPro:FN3_sfInterPro:IPR003961InterPro:IPR013783InterPro:Ig-like_fold
InterPro:Oberon_PHDPANTHER:PTHR21736PANTHER:PTHR21736:SF13PFAM:PF00041PFAM:PF07227PFscan:PS50853
SEG:segSUPFAM:SSF49265UniParc:UPI0002546F84UniProt:M4D3W9MapMan:12.3.3.1.2.2:
Description
AT4G30200 (E=3e-208) VEL1 | Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.
Coordinates
chrA01:+:3497587..3499821
Molecular Weight (calculated)
71244.1 Da
IEP (calculated)
7.847
GRAVY (calculated)
-0.569
Length
640 amino acids
Sequence
(BLAST)
001: MSVDEKRQLV YDLSKQSHLA TEVLQAWSRQ EILQILCAEM GKERKYTGLT KVKIIEALLK LVSEKNSGDY DENNKKNKKK RDSECLPVQR HTKRQRKVDE
101: PTRYVAPTSN NNSSGSCNNA VYCNNLACRA ILREGDSFCR RCSCCICRKY DDNKDPSLWL TCSSDPPFEG DSCGFSCHLE CAFESEKSGL KESEGGCCFY
201: CVSCGKPNSL LECWKKQLTI ARETRRVDVL CYRLLLVQKL TKGSSKYRNL CEAVDEAVKS LEADVGPLTG LPLKMGRGIV NRLQSGPDVQ KLCSSALESL
301: ETPPEVAALP SQRSSKMQHD CYHGLNNEVS ADTATTVSTK IRFEDVNATS LTVILASNEV TSPGNIVHYS IWHRKATEKE YQEKSTCTLF TPNARFVVSG
401: LAPASEYCFK VVSYSGTREL GVDEINVLTR NEEERSESPL TNCSTLSSNP SSVEAESNNG YIVPQNEIKN SPTDENAAKR TTEIVQTEKK EAVPDKNRET
501: LNPVTTTNLL PITPFRSDQT KNRQARKGKS VKENGDHHSA NGGSESGLEH CVKIIRQLEC SGHIEKEFRQ KFLTWYGLRA TPQEIRVVKI FIDTFADDPV
601: ALAEQLIHSF SDRVSSKRSA IGGGGASAVV QSGFCMKLWH
Best Arabidopsis Sequence Match ( AT4G30200.2 )
(BLAST)
001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDC SYVLSNEISA DTATTGSTKI RFEDVNATSL TVVLASNEIP SPPNIVHYSI
401: WHRKVPEKDY PEKSTCTLFI PNTRFVVSGL APASEYCFKV VSYSGTREMG VDEINVLTRS AEEGANCSSA VERSVSPLTN CSTLSSNPSS VEAESNNDYI
501: VPKKPSSKNE DNNSPSVDES AAKRMKRTTD SDIVQIEKDV EQIVLLDDEE QEAVLDKTES ETPVVVTTKS LVGNRNSSDA SLPITPFRSD EIKNRQARIE
601: ISMKDNCNNG DHSANGGTES GLEHCVKIIR QLECSGHIDK NFRQKFLTWY SLRATSQEIR VVKIFIDTFI DDPMALAEQL IDTFDDRVSI KRSAVGGSGA
701: SAVVPSGFCM KLWH
Arabidopsis Description
VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.