CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02856	Soybean	nucleus	94.29	94.17
VIT_11s0052g00830.t01	Wine grape	nucleus	62.91	62.74
CDY14184	Canola	cytosol	39.54	57.17
Solyc07g018270.2.1	Tomato	cytosol	55.84	55.62
CDY51654	Canola	cytosol	39.67	54.38
CDY29247	Canola	cytosol, nucleus, plastid	27.58	51.39
CDY03544	Canola	nucleus	42.93	50.64
Bra010297.1-P	Field mustard	nucleus	43.48	50.0
CDX72220	Canola	nucleus	42.39	49.92
CDY59604	Canola	nucleus	27.45	49.88
Bra024456.1-P	Field mustard	nucleus	29.08	49.65
CDX68633	Canola	nucleus	41.17	48.79
AT4G30200.2	Thale cress	nucleus	47.15	48.6
PGSC0003DMT400019884	Potato	cytosol	24.32	48.51
Bra024097.1-P	Field mustard	cytosol	41.98	48.36
CDY28168	Canola	nucleus	41.85	48.12
Bra011173.1-P	Field mustard	nucleus	41.85	48.12
GSMUA_Achr3P05080_001	Banana	cytosol	39.67	45.62
Bra006824.1-P	Field mustard	nucleus	29.76	44.88
GSMUA_Achr9P13690_001	Banana	plasma membrane	40.22	44.58
Bra020445.1-P	Field mustard	nucleus	33.83	44.54
GSMUA_Achr4P02170_001	Banana	cytosol	39.67	44.44
CDY47942	Canola	nucleus	33.97	44.41
AT5G57380.1	Thale cress	nucleus	37.23	44.19
CDY42262	Canola	nucleus	33.7	44.05
GSMUA_Achr5P16400_001	Banana	cytosol	34.51	44.02
CDY11872	Canola	mitochondrion	33.02	42.71
CDX88618	Canola	mitochondrion	33.29	42.1
KRH72469	Soybean	nucleus	33.29	40.23
KRH16856	Soybean	nucleus	34.24	40.19
AT2G18880.1	Thale cress	nucleus	27.58	38.37
Os02t0152500-01	Rice	nucleus	38.59	37.92
Zm00001d053875_P001	Maize	cytosol, plastid	36.82	35.66
TraesCS6D01G113600.1	Wheat	nucleus	36.28	35.6
KRH41601	Soybean	nucleus, plastid	31.39	35.43
KXG29488	Sorghum	nucleus	36.55	35.35
TraesCS6B01G151600.2	Wheat	nucleus	36.01	35.33
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	36.01	35.29
TraesCS6A01G123400.1	Wheat	nucleus	35.87	35.2
KRH39246	Soybean	nucleus, plastid	29.76	33.64
KRH48444	Soybean	nucleus	32.34	33.1
Zm00001d015293_P015	Maize	nucleus, plastid	37.91	33.02
KRH60306	Soybean	nucleus	31.52	32.18
HORVU7Hr1G099250.1	Barley	cytosol	34.38	31.23
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	34.65	31.1
TraesCS7A01G433000.1	Wheat	cytosol	34.51	31.05

Protein Annotations

EntrezGene:100819331	MapMan:12.3.3.1.2.2	Gene3D:2.60.40.10	EMBL:ACUP02008159	InterPro:FN3_dom	InterPro:FN3_sf
EnsemblPlantsGene:GLYMA_13G097000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1LVQ7	InterPro:IPR003961
InterPro:IPR013783	InterPro:Ig-like_fold	EnsemblPlants:KRH19033	ProteinID:KRH19033	ProteinID:KRH19033.1	InterPro:Oberon_PHD
PFAM:PF07227	PFscan:PS50853	PANTHER:PTHR21736	PANTHER:PTHR21736:SF13	SUPFAM:SSF49265	UniParc:UPI000233CEEF

Description

hypothetical protein

Coordinates

chr13:+:21226983..21232195

Molecular Weight (calculated)

80914.2 Da

IEP (calculated)

5.333

GRAVY (calculated)

-0.574

Length

736 amino acids

Sequence
(BLAST)

001: MATDSSFEGL ALDPSKCSKL SMEEKRELVY EVSNWSHGAS EMLQSWSRQE ILQILCAEMG KERKYTGLTK LKIIENLLKI VSEKKSGGNE TATDPEPQSS
101: PAPGQKPAKR QRKSENPSHI PVPATSVPVN NGGDSINTTF CKNSACKATL NQSDAFCKRC SCCICHQYDD NKDPSLWLIC SSENPFPGVS CGLSCHLECA
201: LKHDGSGIGK DGERPKLDGG FYCVSCWKIN DLLGCWRKQL MVAKDTRRVD ILCYRVSLSQ RLLQGTEMYE ELYKIVDEAV KKLEPEVGPL TGSPVKIGRG
301: IVNRLSSGPE VQKLCGFALE SLDSLSKRIL PLSPKPTNQD AYLLAPNMLR FEDVTATTLT IILGSEEPSG EILAGYTLWH RKVDDVDYPM DPTCTSLLPN
401: RRFSVSGLIP GTEYSFKVVS NDLRESGMCE VQVSTEHGEE EVPNCSATER SQSPVTNCSS LSNPSSVEDE TNNCNPYSDL TDNRADHYPS YHKDSNKLAS
501: GNLSNDAINC SNLGGAGLPP DADSLSDKQH AGGTTASIPS SDVLKLENKH SPEEQITEDM STDDGLISPA LTGRECVPLV GSSEGGLPNT PCKLETLKDG
601: PGKNKRSKSS GKDQENVSGK REGPQDGSTS KKRSGERQEE GRVANGFSDR DFEYYVKVIR WLECEGHIEK NFRQKFLTWY SLRATPQEVR IVKIYIDTFL
701: EDPASLAEQL VDTFSECLSS KRTSVVPAGF CMKLWH

Best Arabidopsis Sequence Match ( AT4G30200.3 )
(BLAST)

001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDT ATTGSTKIRF EDVNATSLTV VLASNEIPSP PNIVHYSIWH RKVPEKDYPE
401: KSTCTLFIPN TRFVVSGLAP ASEYCFKVVS YSGTREMGVD EINVLTRSAE EGANCSSAVE RSVSPLTNCS TLSSNPSSVE AESNNDYIVP KKPSSKNEDN
501: NSPSVDESAA KRMKRTTDSD IVQIEKDVEQ IVLLDDEEQE AVLDKTESET PVVVTTKSLV GNRNSSDASL PITPFRSDEI KNRQARIEIS MKDNCNNGDH
601: SANGGTESGL EHCVKIIRQL ECSGHIDKNF RQKFLTWYSL RATSQEIRVV KIFIDTFIDD PMALAEQLID TFDDRVSIKR SAVGGSGASA VVPSGFCMKL
701: WH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.