CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41601	Soybean	nucleus, plastid	76.56	84.66
KRH39246	Soybean	nucleus, plastid	68.1	75.42
KRH48444	Soybean	nucleus	73.79	73.99
VIT_11s0016g04240.t01	Wine grape	nucleus	67.41	67.41
Solyc05g018390.2.1	Tomato	nucleus	56.59	63.06
GSMUA_Achr10P...	Banana	mitochondrion	17.75	60.66
PGSC0003DMT400070566	Potato	cytosol	27.88	57.76
GSMUA_Achr4P01640_001	Banana	nucleus	51.46	57.7
HORVU5Hr1G026240.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	34.81	52.29
TraesCS5D01G109600.1	Wheat	nucleus	47.85	49.5
Os12t0533500-01	Rice	nucleus	48.41	49.36
TraesCS5B01G102800.1	Wheat	nucleus	47.71	49.35
TraesCS5A01G097100.1	Wheat	nucleus	47.71	49.35
Os05t0145400-01	Rice	cytosol	40.78	48.43
CDX77426	Canola	cytosol	22.75	48.38
Bra015040.1-P	Field mustard	cytosol	22.61	48.08
EES17116	Sorghum	nucleus	45.22	46.7
Zm00001d041715_P003	Maize	nucleus	44.94	46.48
Zm00001d023897_P003	Maize	cytosol	45.77	45.83
HORVU7Hr1G096840.1	Barley	plastid	47.43	45.0
TraesCS1B01G108200.1	Wheat	cytosol	38.28	44.88
TraesCS1D01G090400.1	Wheat	cytosol	38.28	44.88
TraesCS1A01G108900.1	Wheat	cytosol	37.59	44.87
HORVU1Hr1G019570.1	Barley	nucleus	38.0	44.63
CDX77427	Canola	nucleus	36.48	44.2
Zm00001d024824_P001	Maize	cytosol	28.71	43.95
KXG21293	Sorghum	cytosol	36.34	43.89
Bra015039.1-P	Field mustard	nucleus	35.92	43.53
CDY39555	Canola	nucleus	35.92	40.03
GSMUA_Achr10P...	Banana	extracellular	12.76	38.66
KRH02856	Soybean	nucleus	32.45	31.75
KRH19033	Soybean	nucleus	32.18	31.52
KRH16856	Soybean	nucleus	25.52	29.35
AT2G18870.1	Thale cress	nucleus, plasma membrane	9.29	28.03
KRH72469	Soybean	nucleus	23.44	27.75

Protein Annotations

EntrezGene:100816128	MapMan:12.3.3.1.2.2	Gene3D:2.60.40.10	EMBL:ACUP02003358	InterPro:FN3_dom	InterPro:FN3_sf
EnsemblPlantsGene:GLYMA_05G232400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003961	InterPro:IPR013783
InterPro:Ig-like_fold	UniProt:K7KRM1	ProteinID:KRH60304.1	ProteinID:KRH60305.1	EnsemblPlants:KRH60306	ProteinID:KRH60306
ProteinID:KRH60306.1	InterPro:Oberon_PHD	PFAM:PF00041	PFAM:PF07227	PFscan:PS50853	PANTHER:PTHR21736
PANTHER:PTHR21736:SF17	SUPFAM:SSF49265	UniParc:UPI00023C3FD0	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:+:40992124..41003814

Molecular Weight (calculated)

79918.7 Da

IEP (calculated)

7.203

GRAVY (calculated)

-0.450

Length

721 amino acids

Sequence
(BLAST)

001: MDLEEKFLAK VSGVQSLSSS VQSTPEKNGH SDGASKSSEL LQQFLKCGPK KELLQMCFDK DKKSISSKGR MSETKSTSKI TKKQDTKKVS SFSHQPPRKQ
101: PRKGENPTRI IPPLDQSSDF GHSNTWICKN AACRAVLSMD DTFCRRCSCC ICHLFDDNKD PSLWLVCTSE SAQGDSCGLS CHIKCALQHE KVGVVDHGQL
201: MQLDGGYCCA SCGKVTGILG CWKKQLNIAK DARRVDVLCY RIYLSYRLLD GTSKFKDLHQ TVQEAKAKLE TEVGPVNGVS SKMARGIVSR LHIASDIQKL
301: CSLAIEKADS WLATVPNVNS DSTEGSFPAA CKFVFEEVTT SSAKIILIEM SSICSEEIKG YKLWYYKSWD ESPTKDPVSV FPKSQRRILI SNLKPCTEYT
401: FRIISYTDTR DLGHSEAKCF TKSIEIIKNN PSSSVAMNNE KENLLTRGNS SASKIGPNAT MEGYGFKVRD LGKFLRLAWA QEQGYLEEFC CANVKNCCGQ
501: SEMVDKLRIP EAQLPSVSRG LDLNVVSVPD LNEELTPPFE YSRDEDNGCS LLQAVEADDD AASHDLEKNG LARSHGSGDS QTWTHGPTGE VSAVDSRIDM
601: CKKRIASTNE ETHDCDSTLI NGSPLRISDG SCSLDENFEY CVKVIRWLEC EGHIKHEFRL KLLTWFSLRA TEQERRVVNT FIQTLIDDPG SLAGQLVDSF
701: SDIISNKRLR SGFCSKAGAS N

Best Arabidopsis Sequence Match ( AT3G24440.1 )
(BLAST)

001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH

Arabidopsis Description

VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.