Factsheet for Bra015039.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77427	Canola	nucleus	96.64	96.64
Bra015040.1-P	Field mustard	cytosol	39.5	69.32
AT3G24440.1	Thale cress	nucleus	70.08	69.27
GSMUA_Achr10P...	Banana	mitochondrion	16.47	46.45
KRH39246	Soybean	nucleus, plastid	44.71	40.86
GSMUA_Achr4P01640_001	Banana	nucleus	43.03	39.81
KRH41601	Soybean	nucleus, plastid	43.53	39.72
Solyc05g018390.2.1	Tomato	nucleus	42.86	39.41
KRH48444	Soybean	nucleus	45.55	37.69
KXG21293	Sorghum	cytosol	37.14	37.02
VIT_11s0016g04240.t01	Wine grape	nucleus	44.37	36.62
HORVU5Hr1G026240.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.08	36.04
KRH60306	Soybean	nucleus	43.53	35.92
Zm00001d024824_P001	Maize	cytosol	28.07	35.46
TraesCS1D01G090400.1	Wheat	cytosol	36.64	35.45
TraesCS1A01G108900.1	Wheat	cytosol	35.8	35.26
Os05t0145400-01	Rice	cytosol	35.97	35.26
TraesCS1B01G108200.1	Wheat	cytosol	36.13	34.96
Bra024456.1-P	Field mustard	nucleus	24.54	33.87
EES17116	Sorghum	nucleus	39.5	33.67
Os12t0533500-01	Rice	nucleus	40.0	33.66
TraesCS5D01G109600.1	Wheat	nucleus	39.16	33.43
TraesCS5B01G102800.1	Wheat	nucleus	38.99	33.29
Zm00001d041715_P003	Maize	nucleus	38.99	33.29
TraesCS5A01G097100.1	Wheat	nucleus	38.99	33.29
HORVU1Hr1G019570.1	Barley	nucleus	34.29	33.22
Zm00001d023897_P003	Maize	cytosol	39.66	32.78
HORVU7Hr1G096840.1	Barley	plastid	39.33	30.79
PGSC0003DMT400070566	Potato	cytosol	17.65	30.17
Bra006824.1-P	Field mustard	nucleus	24.2	29.51
VIT_04s0008g04380.t01	Wine grape	cytosol	41.51	28.96
GSMUA_Achr10P...	Banana	extracellular	11.26	28.15
Bra011173.1-P	Field mustard	nucleus	29.75	27.66
Bra024097.1-P	Field mustard	cytosol	28.91	26.92
Bra010297.1-P	Field mustard	nucleus	28.74	26.72
Bra020445.1-P	Field mustard	nucleus	23.7	25.22

Protein Annotations

EnsemblPlants:Bra015039.1	EnsemblPlants:Bra015039.1-P	EnsemblPlantsGene:Bra015039	Gene3D:2.60.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:FN3_dom	InterPro:FN3_sf	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:Oberon_PHD	PANTHER:PTHR21736	PANTHER:PTHR21736:SF17	PFAM:PF07227	PFscan:PS50853	SEG:seg
SUPFAM:SSF49265	UniParc:UPI0002540CF2	UniProt:M4DEW7	MapMan:12.3.3.1.2.2	:	:

Description

AT3G24440 (E=3e-251) VRN5, VIL1 | VRN5 (VERNALIZATION 5)

Coordinates

chrA07:+:4039490..4041426

Molecular Weight (calculated)

66281.2 Da

IEP (calculated)

4.629

GRAVY (calculated)

-0.579

Length

595 amino acids

Sequence
(BLAST)

001: METKSKISQS RKSHNKSSKK HDANKKHQQQ EDDAGITNSW ICKNASCRAN VPKDDSFCKR CSCCVCHSFD ENKDPSLWLV CESEKPNDVE FCGLSCHVEC
101: AFREDKVGVT SIGNLMKLDG CFCCYSCGKV SEILGCWKKQ LVAAKDARRR DVLCYRIELS YRLLDGTCRF SELHEVVKAA KSMLEDEVGP LDGPSARTDR
201: GIVSRLPVAS EVQELCTSAI KMAEDWSANV ARDSIPAACR FHFEDVASTR VTLRLIELPS AEECGVKGYR LWCFKKGETP EDDQFLDLSR AERRILLADL
301: DPCKEYMFRV VSYTEAGCLG HSNARCVTKS VEILRDNSVE GRTKRRIDLL GNDQASDREE KSSISSGFQI GQLGKYVELA EAQEDGLLDA FYDVDTDKSS
401: EPEVEVPPRR PLGFDLNVVS VPDLNEEFTQ PDSSGGEDNG VPLDSLAEAD VANGNGNYND DDDDTVSNGT QKNNNCLVRS DGSGDDPEFD FLMTRKRKAD
501: SNSHGSENNE CDSSPIDDTI EKCMKVVRWL ECEGHIEKTF RIRFLTWFGL SSTAQEQSVV STFVQTLEDD PSSLAEQLLH VFSDVISNKM PNNGS

Best Arabidopsis Sequence Match ( AT3G24440.1 )
(BLAST)

001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH

Arabidopsis Description

VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.