Factsheet for GSMUA_Achr4P01640_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	mitochondrion	25.97	79.15
HORVU5Hr1G026240.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.17	59.17
KRH41601	Soybean	nucleus, plastid	56.77	55.98
Solyc05g018390.2.1	Tomato	nucleus	56.14	55.8
GSMUA_Achr10P...	Banana	extracellular	20.53	55.46
TraesCS5D01G109600.1	Wheat	nucleus	60.03	55.38
TraesCS5A01G097100.1	Wheat	nucleus	60.03	55.38
KRH39246	Soybean	nucleus, plastid	55.99	55.3
TraesCS5B01G102800.1	Wheat	nucleus	59.88	55.24
Os12t0533500-01	Rice	nucleus	60.03	54.6
Zm00001d041715_P003	Maize	nucleus	57.54	53.08
Os05t0145400-01	Rice	cytosol	49.77	52.72
EES17116	Sorghum	nucleus	56.3	51.86
KRH48444	Soybean	nucleus	57.7	51.6
KRH60306	Soybean	nucleus	57.7	51.46
KXG21293	Sorghum	cytosol	47.43	51.09
TraesCS1D01G090400.1	Wheat	cytosol	48.52	50.73
TraesCS1B01G108200.1	Wheat	cytosol	48.52	50.73
TraesCS1A01G108900.1	Wheat	cytosol	47.59	50.66
HORVU7Hr1G096840.1	Barley	plastid	59.72	50.53
HORVU1Hr1G019570.1	Barley	nucleus	48.06	50.33
Zm00001d023897_P003	Maize	cytosol	56.14	50.14
PGSC0003DMT400070566	Potato	cytosol	26.75	49.43
Zm00001d024824_P001	Maize	cytosol	34.84	47.56
CDX77426	Canola	cytosol	25.04	47.49
Bra015040.1-P	Field mustard	cytosol	24.88	47.2
CDX77427	Canola	nucleus	40.28	43.53
Bra015039.1-P	Field mustard	nucleus	39.81	43.03
VIT_04s0008g04380.t01	Wine grape	cytosol	54.28	40.91
CDY39555	Canola	nucleus	39.81	39.57
GSMUA_Achr5P16400_001	Banana	cytosol	31.1	34.66
GSMUA_Achr3P05080_001	Banana	cytosol	33.59	33.75
GSMUA_Achr4P02170_001	Banana	cytosol	33.9	33.18
GSMUA_Achr9P13690_001	Banana	plasma membrane	34.21	33.13
GSMUA_Achr8P33580_001	Banana	plasma membrane	31.88	30.55
AT2G18870.1	Thale cress	nucleus, plasma membrane	9.02	24.27

Protein Annotations

EnsemblPlants:GSMUA_Achr4P01640_001	EnsemblPlants:GSMUA_Achr4T01640_001	EnsemblPlantsGene:GSMUA_Achr4G01640_001	Gene3D:2.60.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:FN3_dom	InterPro:FN3_sf	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:Oberon_PHD	PANTHER:PTHR21736	PANTHER:PTHR21736:SF17	PFAM:PF00041	PFAM:PF07227	PFscan:PS50853
SEG:seg	SUPFAM:SSF49265	UniParc:UPI00029503F2	UniProt:M0SK81	MapMan:12.3.3.1.2.2	:

Description

Fibronectin type III domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G01640_001]

Coordinates

chr4:-:1379567..1382249

Molecular Weight (calculated)

71910.0 Da

IEP (calculated)

6.209

GRAVY (calculated)

-0.418

Length

643 amino acids

Sequence
(BLAST)

001: MAQSCLDKQR KQPSSSKCKM TVVSKATTKG CKNLDLKKLS LDHPDLTDNE PPRKQPRRSE HPVHLPSAEI FEDFRSANTW ICKNSACKAV LSSEDTFCKR
101: CSCCICHLFD DNKDPSLWLV CTSESGDRDC CGLSCHIECA LQCQKAGVFS LGQFMLLDGS YCCASCGKVS GIIGCWKRQL AVAKDARRVD VLCYRIFLSY
201: RLLDGTSRFK ELHQTVEEAK AKLETEVGPV DGVSAKMARG IVSRLSIAAD VQKLCFAAIE KADEWLRLRS TGHLEENHKD SLPAACRFHF EEISSSSLVI
301: VLKEASSTFD AIKGYKFWYC KTRDQPYKKE PVIFPRAQRR ILITNLQPCT EYAFRIISFT EDGDFGHSES KCFTKSVEII NKHMENNGAE GCSSSDKQEG
401: KTPVARSSGF KVRNLGKILR LAWAQEDGCY DGFYDDNVQE ESCGGSGEVI AEVVEAAPAT SRRLDLNVAT VPDLNAEATP PTECSPEEEN ACSSEKNELA
501: RSNGSDDSQT CAATLVHEVP AVESRPECEE QPAEETCEGD STLVSGSPRR FQHRLGQLDD NYEYCVKVIR WLECLGHIES DFRMKFLTWF SLRSTEQERR
601: VVLTFIHTLI EEPSSLAGQL LDSFSEIVTC KRLRSGFCSK LWH

Best Arabidopsis Sequence Match ( AT3G24440.1 )
(BLAST)

001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH

Arabidopsis Description

VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.