Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G026240.2 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 52.76 | 77.71 |
| TraesCS5B01G102800.1 | Wheat | nucleus | 75.39 | 76.47 |
| TraesCS5A01G097100.1 | Wheat | nucleus | 75.11 | 76.18 |
| TraesCS5D01G109600.1 | Wheat | nucleus | 74.96 | 76.04 |
| Zm00001d041715_P003 | Maize | nucleus | 70.58 | 71.59 |
| EES17116 | Sorghum | nucleus | 68.88 | 69.77 |
| HORVU7Hr1G096840.1 | Barley | plastid | 74.96 | 69.74 |
| Zm00001d023897_P003 | Maize | cytosol | 69.87 | 68.61 |
| GSMUA_Achr10P... | Banana | mitochondrion | 18.25 | 61.14 |
| GSMUA_Achr4P01640_001 | Banana | nucleus | 54.6 | 60.03 |
| Os05t0145400-01 | Rice | cytosol | 44.98 | 52.39 |
| KRH41601 | Soybean | nucleus, plastid | 48.23 | 52.3 |
| KRH39246 | Soybean | nucleus, plastid | 47.52 | 51.61 |
| Solyc05g018390.2.1 | Tomato | nucleus | 46.96 | 51.31 |
| KRH60306 | Soybean | nucleus | 49.36 | 48.41 |
| KRH48444 | Soybean | nucleus | 48.8 | 47.98 |
| PGSC0003DMT400070566 | Potato | cytosol | 22.91 | 46.55 |
| CDX77426 | Canola | cytosol | 22.07 | 46.02 |
| Bra015040.1-P | Field mustard | cytosol | 21.78 | 45.43 |
| GSMUA_Achr10P... | Banana | extracellular | 14.14 | 42.02 |
| CDX77427 | Canola | nucleus | 34.23 | 40.67 |
| Bra015039.1-P | Field mustard | nucleus | 33.66 | 40.0 |
| VIT_04s0008g04380.t01 | Wine grape | cytosol | 48.23 | 39.98 |
| CDY39555 | Canola | nucleus | 33.8 | 36.94 |
| Os08t0220600-01 | Rice | cytosol | 27.44 | 30.79 |
| Os02t0152500-01 | Rice | nucleus | 30.13 | 28.44 |
| AT2G18870.1 | Thale cress | nucleus, plasma membrane | 8.49 | 25.1 |
Protein Annotations
| MapMan:12.3.3.1.2.2 | Gene3D:2.60.40.10 | EntrezGene:4352406 | ProteinID:ABA98812.1 | EMBL:AK068646 | ProteinID:BAT17446.1 |
| InterPro:FN3_dom | InterPro:FN3_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR003961 |
| InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:Oberon_PHD | EnsemblPlantsGene:Os12g0533500 | EnsemblPlants:Os12t0533500-01 | PFAM:PF00041 |
| PFAM:PF07227 | PFscan:PS50853 | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF17 | UniProt:Q2QPD5 | SUPFAM:SSF49265 |
| UniParc:UPI0000680F16 | RefSeq:XP_015620391.1 | SEG:seg | : | : | : |
Description
VIN3-LIKE 1, VERNALIZATION INSENSITIVE 3-LIKE 2Protein containing PHD domain, FNIII domain and VID domain, Positive regulator of flowering (Os12t0533500-01)
Coordinates
chr12:-:21210477..21214801
Molecular Weight (calculated)
78383.4 Da
IEP (calculated)
6.535
GRAVY (calculated)
-0.478
Length
707 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSAGGDPP PPGLFAAALH ACSGASALEE HIHADDSNTI SDNTLEQLGF LDQESNDASV NTEKIQSSTP KCKSVEDIPI APAAKRCKNM DSKKLVPNSN
101: NNSCLTGSQA PRKLPRKGDY PVQLRRNETF QDTKPPSTWI CKNAACKAVL TADNTFCKRC SCCICHLFDD NKDPSLWLVC SSETGDRDCC ESSCHIECAL
201: QHQKVGCVDL GQSIQLDGNY CCAACGKVIG ILGFWKRQLM VAKDARRVDI LCSRIYLSHR LLDGTTRFKE FHKIVEDAKA KLETEVGPLD GTSSKMARGI
301: VGRLPVAADV QKLCSLAIDM ADAWLKSNCK AETKQIDTLP AACRFRFEDI TTSSLVVVLK EAASSQYHAI KGYKLWYWNS REQPSTRVPA IFPKDQRRIL
401: VSNLQPCTEY AFRIISFTEY GDLGHSECKC FTKSVEIIHK NMEHGAEGCS STAKRDSKSR NGWSSGFQVH QLGKVLRKAW AEENGCPSEA CKDEIEDSCC
501: QSDSALHDKD QAAHVVSHEL DLNESSVPDL NAEVVMPTES FRNENICSPG KNGLRKSNGS SDSDICAEGL VGEAPAMESR SQSRKQTSDL EQETYLEQET
601: GADDSTLLIS PPKHFSRRLG QLDDNYEYCV KVIRWLECSG HIEKDFRMKF LTWFSLRSTE QERRVVITFI RTLADDPSSL AGQLLDSFEE IVSSKKPRTG
701: FCSKLWH
101: NNSCLTGSQA PRKLPRKGDY PVQLRRNETF QDTKPPSTWI CKNAACKAVL TADNTFCKRC SCCICHLFDD NKDPSLWLVC SSETGDRDCC ESSCHIECAL
201: QHQKVGCVDL GQSIQLDGNY CCAACGKVIG ILGFWKRQLM VAKDARRVDI LCSRIYLSHR LLDGTTRFKE FHKIVEDAKA KLETEVGPLD GTSSKMARGI
301: VGRLPVAADV QKLCSLAIDM ADAWLKSNCK AETKQIDTLP AACRFRFEDI TTSSLVVVLK EAASSQYHAI KGYKLWYWNS REQPSTRVPA IFPKDQRRIL
401: VSNLQPCTEY AFRIISFTEY GDLGHSECKC FTKSVEIIHK NMEHGAEGCS STAKRDSKSR NGWSSGFQVH QLGKVLRKAW AEENGCPSEA CKDEIEDSCC
501: QSDSALHDKD QAAHVVSHEL DLNESSVPDL NAEVVMPTES FRNENICSPG KNGLRKSNGS SDSDICAEGL VGEAPAMESR SQSRKQTSDL EQETYLEQET
601: GADDSTLLIS PPKHFSRRLG QLDDNYEYCV KVIRWLECSG HIEKDFRMKF LTWFSLRSTE QERRVVITFI RTLADDPSSL AGQLLDSFEE IVSSKKPRTG
701: FCSKLWH
001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANADLV PAACRFHFED IAPKQVTLRL IELPSAVEYD VKGYKLWYFK KGEMPEDDLF VDCSRTERRM
301: VISDLEPCTE YTFRVVSYTE AGIFGHSNAM CFTKSVEILK PVDGKEKRTI DLVGNAQPSD REEKSSISSR FQIGQLGKYV QLAEAQEEGL LEAFYNVDTE
401: KICEPPEEEL PPRRPHGFDL NVVSVPDLNE EFTPPDSSGG EDNGVPLNSL AEADGGDHDD NCDDAVSNGR RKNNNDCLVI SDGSGDDTGF DFLMTRKRKA
501: ISDSNDSENH ECDSSSIDDT LEKCVKVIRW LEREGHIKTT FRVRFLTWFS MSSTAQEQSV VSTFVQTLED DPGSLAGQLV DAFTDVVSTK RPNNGVMTSH
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANADLV PAACRFHFED IAPKQVTLRL IELPSAVEYD VKGYKLWYFK KGEMPEDDLF VDCSRTERRM
301: VISDLEPCTE YTFRVVSYTE AGIFGHSNAM CFTKSVEILK PVDGKEKRTI DLVGNAQPSD REEKSSISSR FQIGQLGKYV QLAEAQEEGL LEAFYNVDTE
401: KICEPPEEEL PPRRPHGFDL NVVSVPDLNE EFTPPDSSGG EDNGVPLNSL AEADGGDHDD NCDDAVSNGR RKNNNDCLVI SDGSGDDTGF DFLMTRKRKA
501: ISDSNDSENH ECDSSSIDDT LEKCVKVIRW LEREGHIKTT FRVRFLTWFS MSSTAQEQSV VSTFVQTLED DPGSLAGQLV DAFTDVVSTK RPNNGVMTSH
Arabidopsis Description
VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.