Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G097100.1 | Wheat | nucleus | 97.56 | 97.56 |
| TraesCS5D01G109600.1 | Wheat | nucleus | 97.13 | 97.13 |
| HORVU5Hr1G026240.2 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 61.55 | 89.38 |
| HORVU7Hr1G096840.1 | Barley | plastid | 94.4 | 86.58 |
| Os12t0533500-01 | Rice | nucleus | 76.47 | 75.39 |
| Zm00001d041715_P003 | Maize | nucleus | 72.6 | 72.6 |
| EES17116 | Sorghum | nucleus | 72.02 | 71.92 |
| Zm00001d023897_P003 | Maize | cytosol | 70.73 | 68.47 |
| GSMUA_Achr10P... | Banana | mitochondrion | 18.65 | 61.61 |
| GSMUA_Achr4P01640_001 | Banana | nucleus | 55.24 | 59.88 |
| KRH41601 | Soybean | nucleus, plastid | 46.92 | 50.15 |
| Solyc05g018390.2.1 | Tomato | nucleus | 46.48 | 50.08 |
| KRH39246 | Soybean | nucleus, plastid | 46.48 | 49.77 |
| TraesCS1B01G108200.1 | Wheat | cytosol | 42.9 | 48.62 |
| KRH60306 | Soybean | nucleus | 49.35 | 47.71 |
| KRH48444 | Soybean | nucleus | 48.21 | 46.73 |
| CDX77426 | Canola | cytosol | 21.81 | 44.84 |
| Bra015040.1-P | Field mustard | cytosol | 21.66 | 44.54 |
| PGSC0003DMT400070566 | Potato | cytosol | 22.24 | 44.54 |
| GSMUA_Achr10P... | Banana | extracellular | 14.63 | 42.86 |
| CDX77427 | Canola | nucleus | 33.86 | 39.66 |
| Bra015039.1-P | Field mustard | nucleus | 33.29 | 38.99 |
| VIT_04s0008g04380.t01 | Wine grape | cytosol | 46.63 | 38.1 |
| CDY39555 | Canola | nucleus | 33.72 | 36.32 |
| TraesCS6B01G151600.2 | Wheat | nucleus | 26.97 | 25.07 |
| AT2G18870.1 | Thale cress | nucleus, plasma membrane | 8.18 | 23.85 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G102800.1 | EnsemblPlantsGene:TraesCS5B01G102800 | Gene3D:2.60.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:FN3_dom | InterPro:FN3_sf | InterPro:IPR003961 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:Oberon_PHD |
| PANTHER:PTHR21736 | PANTHER:PTHR21736:SF17 | PFAM:PF07227 | PFscan:PS50853 | SEG:seg | SUPFAM:SSF49265 |
| TIGR:cd00063 | MapMan:12.3.3.1.2.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:136622650..136627824
Molecular Weight (calculated)
78049.2 Da
IEP (calculated)
7.034
GRAVY (calculated)
-0.560
Length
697 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSTGGDPSG FAAAALHASS DASEHEEIKP ADDSNTISDY AQEPLNFFPE QESNDASVST EKKQSVVSKC KSVEEIPREA TVKRCKNIDS KKLFSNNNNS
101: PSLTGIQALR KPPRKGGHPI QLRESEMFQD KKPPSTWICK NAACKAVLTS ENTFCKRCSC CICHLFDDNK DPSLWLVCSS ETGDTDCCES SCHVECALQR
201: RKAGRIDLGQ SMHLDGNYCC AACGKVIGIP GFWKRQLAVA KDARRVDILC SRIYLSHRLL DGTTRFKELH QIVQDAKAKL ETEVGPLDGS SKMARCIVGR
301: LPVAADVQKL CSLAMEKADD WLQSNSQAET KQIDTLPTAC RFRFEDITAS SLVIVLKETA SSQYHAIKGY KLWYWNSREP PSTGEPVIFP KDQRRILISS
401: LQPCTEYAFR IMSFIEDGEL GHSESKCFTR SVEIMHKNIE HGAEGCSSTA KRNVKRQNGR SSGFKVRQLG KVLRRAWEED GFPSEFCKDE IEDSCNQSDS
501: VILEKGQVAH VVSRKLDLNE TSVPDLNAEV VMPTECLRNE NGYSSGKNDL RKSNGCGDFA TCTEGHVGEA PAMESRSQSR KQTSDLEQET CAEDGNLVIG
601: SQRHFSRRLG ELDNNYEYCV KTIRWLECCG HIEKEFRMRF LTWFSLRSTE QERRVVLTFI HTLVDEPGSL AGQLLDSFEE IVASKRPRTG FCTKLWH
101: PSLTGIQALR KPPRKGGHPI QLRESEMFQD KKPPSTWICK NAACKAVLTS ENTFCKRCSC CICHLFDDNK DPSLWLVCSS ETGDTDCCES SCHVECALQR
201: RKAGRIDLGQ SMHLDGNYCC AACGKVIGIP GFWKRQLAVA KDARRVDILC SRIYLSHRLL DGTTRFKELH QIVQDAKAKL ETEVGPLDGS SKMARCIVGR
301: LPVAADVQKL CSLAMEKADD WLQSNSQAET KQIDTLPTAC RFRFEDITAS SLVIVLKETA SSQYHAIKGY KLWYWNSREP PSTGEPVIFP KDQRRILISS
401: LQPCTEYAFR IMSFIEDGEL GHSESKCFTR SVEIMHKNIE HGAEGCSSTA KRNVKRQNGR SSGFKVRQLG KVLRRAWEED GFPSEFCKDE IEDSCNQSDS
501: VILEKGQVAH VVSRKLDLNE TSVPDLNAEV VMPTECLRNE NGYSSGKNDL RKSNGCGDFA TCTEGHVGEA PAMESRSQSR KQTSDLEQET CAEDGNLVIG
601: SQRHFSRRLG ELDNNYEYCV KTIRWLECCG HIEKEFRMRF LTWFSLRSTE QERRVVLTFI HTLVDEPGSL AGQLLDSFEE IVASKRPRTG FCTKLWH
001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANADLV PAACRFHFED IAPKQVTLRL IELPSAVEYD VKGYKLWYFK KGEMPEDDLF VDCSRTERRM
301: VISDLEPCTE YTFRVVSYTE AGIFGHSNAM CFTKSVEILK PVDGKEKRTI DLVGNAQPSD REEKSSISSR FQIGQLGKYV QLAEAQEEGL LEAFYNVDTE
401: KICEPPEEEL PPRRPHGFDL NVVSVPDLNE EFTPPDSSGG EDNGVPLNSL AEADGGDHDD NCDDAVSNGR RKNNNDCLVI SDGSGDDTGF DFLMTRKRKA
501: ISDSNDSENH ECDSSSIDDT LEKCVKVIRW LEREGHIKTT FRVRFLTWFS MSSTAQEQSV VSTFVQTLED DPGSLAGQLV DAFTDVVSTK RPNNGVMTSH
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANADLV PAACRFHFED IAPKQVTLRL IELPSAVEYD VKGYKLWYFK KGEMPEDDLF VDCSRTERRM
301: VISDLEPCTE YTFRVVSYTE AGIFGHSNAM CFTKSVEILK PVDGKEKRTI DLVGNAQPSD REEKSSISSR FQIGQLGKYV QLAEAQEEGL LEAFYNVDTE
401: KICEPPEEEL PPRRPHGFDL NVVSVPDLNE EFTPPDSSGG EDNGVPLNSL AEADGGDHDD NCDDAVSNGR RKNNNDCLVI SDGSGDDTGF DFLMTRKRKA
501: ISDSNDSENH ECDSSSIDDT LEKCVKVIRW LEREGHIKTT FRVRFLTWFS MSSTAQEQSV VSTFVQTLED DPGSLAGQLV DAFTDVVSTK RPNNGVMTSH
Arabidopsis Description
VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.