Factsheet for HORVU5Hr1G026240.2

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
TargetP:	secretory

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G109600.1	Wheat	nucleus	89.79	61.84
TraesCS5A01G097100.1	Wheat	nucleus	89.38	61.55
TraesCS5B01G102800.1	Wheat	nucleus	89.38	61.55
GSMUA_Achr10P...	Banana	mitochondrion	26.46	60.19
HORVU7Hr1G096840.1	Barley	plastid	93.12	58.82
Zm00001d041715_P003	Maize	nucleus	78.54	54.09
Os12t0533500-01	Rice	nucleus	77.71	52.76
Zm00001d023897_P003	Maize	cytosol	75.21	50.14
EES17116	Sorghum	nucleus	72.29	49.71
PGSC0003DMT400070566	Potato	cytosol	33.12	45.69
GSMUA_Achr4P01640_001	Banana	nucleus	59.17	44.17
Solyc05g018390.2.1	Tomato	nucleus	52.29	38.79
KRH39246	Soybean	nucleus, plastid	51.46	37.94
KRH41601	Soybean	nucleus, plastid	50.83	37.42
HORVU1Hr1G019570.1	Barley	nucleus	47.29	36.97
KRH60306	Soybean	nucleus	52.29	34.81
KRH48444	Soybean	nucleus	51.67	34.49
CDX77426	Canola	cytosol	21.04	29.79
CDX77427	Canola	nucleus	36.88	29.75
Bra015040.1-P	Field mustard	cytosol	20.83	29.5
Bra015039.1-P	Field mustard	nucleus	36.04	29.08
VIT_04s0008g04380.t01	Wine grape	cytosol	51.46	28.96
CDY39555	Canola	nucleus	36.46	27.05
AT2G18870.1	Thale cress	nucleus, plasma membrane	10.42	20.92
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	26.46	16.91
HORVU7Hr1G099250.1	Barley	cytosol	27.08	16.05
GSMUA_Achr10P...	Banana	extracellular	0.21	0.42

Protein Annotations

EnsemblPlants:HORVU5Hr1G026240.2	EnsemblPlantsGene:HORVU5Hr1G026240	Gene3D:2.60.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:FN3_dom	InterPro:FN3_sf	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	PANTHER:PTHR21736
PANTHER:PTHR21736:SF17	PFAM:PF00041	PFscan:PS50853	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF49265
UniParc:UPI000B461074	UniProt:A0A287QQI2	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:147937379..147939171

Molecular Weight (calculated)

53628.8 Da

IEP (calculated)

7.851

GRAVY (calculated)

-0.526

Length

480 amino acids

Sequence
(BLAST)

001: XXXXXXXXIL EILMFWKRQL AVAKDARRVD ILCSRIHLSH RLLDGTTRFK ELHQIVQDAK AKLETEVGPL DGSSKMARCI VGRLPVAADV QKLCSLAMKK
101: ADDWLQSNSQ AETKQIDTLP TACRFRFEDI TASSLVIVLK ETASSQYHAI KGYKLWYWNS REPPSTGEPV IFPKDQRRIL ISNLQPCTEY AFRIISFVQG
201: GELGHSESKC FTRSVEIIHK NTEHGAEGCS STAKRNVRRQ NGRSSGFKVR QLGKVLRRAW EEDGCPSEFC KDEIEDSCDQ SDSVLPEKGQ VAHVVPRKLD
301: LNETSVPDLN AEVVMPTECL RNENGYSSRK NDLRKSNGCG DFATCTEGHV GEAPAMESRS QSRKQTSDLE QETCAEDGNL VIGSQRHFSR RLGELDNNYE
401: YCVKTIRWLE CCGHIEKEFR MRFLTWFSLR STEQERRVVL TFIRTLVDEP GSLAGQLLDS FEEIVASKRP RTGFCTKLWH

Best Arabidopsis Sequence Match ( AT3G24440.1 )
(BLAST)

001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH

Arabidopsis Description

VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.