Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77426 | Canola | cytosol | 92.33 | 92.33 |
| GSMUA_Achr10P... | Banana | mitochondrion | 29.5 | 47.39 |
| Bra015039.1-P | Field mustard | nucleus | 69.32 | 39.5 |
| AT3G24440.1 | Thale cress | nucleus | 62.83 | 35.38 |
| Solyc05g018390.2.1 | Tomato | nucleus | 50.44 | 26.43 |
| KRH39246 | Soybean | nucleus, plastid | 49.85 | 25.96 |
| KXG21293 | Sorghum | cytosol | 44.25 | 25.13 |
| KRH41601 | Soybean | nucleus, plastid | 48.08 | 25.0 |
| GSMUA_Achr4P01640_001 | Banana | nucleus | 47.2 | 24.88 |
| Os05t0145400-01 | Rice | cytosol | 44.54 | 24.88 |
| KRH48444 | Soybean | nucleus | 50.74 | 23.92 |
| GSMUA_Achr10P... | Banana | extracellular | 16.52 | 23.53 |
| VIT_11s0016g04240.t01 | Wine grape | nucleus | 48.67 | 22.88 |
| TraesCS1D01G090400.1 | Wheat | cytosol | 41.3 | 22.76 |
| HORVU1Hr1G019570.1 | Barley | nucleus | 41.0 | 22.64 |
| KRH60306 | Soybean | nucleus | 48.08 | 22.61 |
| TraesCS1B01G108200.1 | Wheat | cytosol | 40.71 | 22.44 |
| TraesCS1A01G108900.1 | Wheat | cytosol | 39.82 | 22.35 |
| EES17116 | Sorghum | nucleus | 45.43 | 22.06 |
| Zm00001d041715_P003 | Maize | nucleus | 45.13 | 21.95 |
| Bra024456.1-P | Field mustard | nucleus | 27.73 | 21.81 |
| TraesCS5A01G097100.1 | Wheat | nucleus | 44.84 | 21.81 |
| TraesCS5D01G109600.1 | Wheat | nucleus | 44.84 | 21.81 |
| Os12t0533500-01 | Rice | nucleus | 45.43 | 21.78 |
| TraesCS5B01G102800.1 | Wheat | nucleus | 44.54 | 21.66 |
| Zm00001d024824_P001 | Maize | cytosol | 29.79 | 21.44 |
| Zm00001d023897_P003 | Maize | cytosol | 45.13 | 21.25 |
| HORVU5Hr1G026240.2 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 29.5 | 20.83 |
| Bra006824.1-P | Field mustard | nucleus | 29.79 | 20.7 |
| HORVU7Hr1G096840.1 | Barley | plastid | 44.54 | 19.87 |
| VIT_04s0008g04380.t01 | Wine grape | cytosol | 46.02 | 18.29 |
| Bra011173.1-P | Field mustard | nucleus | 32.74 | 17.34 |
| Bra024097.1-P | Field mustard | cytosol | 31.56 | 16.74 |
| Bra010297.1-P | Field mustard | nucleus | 31.27 | 16.56 |
| Bra020445.1-P | Field mustard | nucleus | 27.14 | 16.46 |
| PGSC0003DMT400070566 | Potato | cytosol | 8.26 | 8.05 |
Protein Annotations
| EnsemblPlants:Bra015040.1 | EnsemblPlants:Bra015040.1-P | EnsemblPlantsGene:Bra015040 | InterPro:Oberon_PHD | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF17 |
| PFAM:PF07227 | SEG:seg | UniParc:UPI0002540CF1 | UniProt:M4DEW8 | MapMan:12.3.3.1.2.2 | : |
Description
AT3G24440 (E=3e-121) VRN5, VIL1 | VRN5 (VERNALIZATION 5)
Coordinates
chrA07:+:4035226..4036398
Molecular Weight (calculated)
38650.1 Da
IEP (calculated)
7.596
GRAVY (calculated)
-0.414
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTKRKISQS RKRQQQEADG DISNSWICKN PSCRANVPLD DCYCKWCSCC VCHAFDKTND PTLWLVCESE KPNDVEFCGL SCHVECAFRK DMVWVNANGN
101: LMKRDGYFCC YSCGKVSDIL GFWKKQLVAA KDARRIDVLC YRIELSYRLL DGTSRFSELH EIVKEAKSKL EVEVGPLDGP CARNDRGIVS RLPVAMQVQE
201: LSSFAIRRAE YWSTSVARDL VPAACRFDFI DVAPRQVILR LIEHPSAEER GVKGYRLWCD KKGETPEDDQ FDTDLSRGEA QRMRILFSDL EPCKEYIFRA
301: VSYTRAGVLG HSIAGCFTKS IEIFQRSRGN SVDGIGERH
101: LMKRDGYFCC YSCGKVSDIL GFWKKQLVAA KDARRIDVLC YRIELSYRLL DGTSRFSELH EIVKEAKSKL EVEVGPLDGP CARNDRGIVS RLPVAMQVQE
201: LSSFAIRRAE YWSTSVARDL VPAACRFDFI DVAPRQVILR LIEHPSAEER GVKGYRLWCD KKGETPEDDQ FDTDLSRGEA QRMRILFSDL EPCKEYIFRA
301: VSYTRAGVLG HSIAGCFTKS IEIFQRSRGN SVDGIGERH
001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH
Arabidopsis Description
VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.