Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G090400.1 | Wheat | cytosol | 96.52 | 94.8 |
| TraesCS1B01G108200.1 | Wheat | cytosol | 95.7 | 93.98 |
| HORVU1Hr1G019570.1 | Barley | nucleus | 85.6 | 84.2 |
| Os05t0145400-01 | Rice | cytosol | 65.07 | 64.74 |
| KXG21293 | Sorghum | cytosol | 60.43 | 61.14 |
| Zm00001d024824_P001 | Maize | cytosol | 43.87 | 56.26 |
| GSMUA_Achr10P... | Banana | mitochondrion | 19.04 | 54.5 |
| GSMUA_Achr4P01640_001 | Banana | nucleus | 50.66 | 47.59 |
| Solyc05g018390.2.1 | Tomato | nucleus | 45.86 | 42.81 |
| KRH39246 | Soybean | nucleus, plastid | 46.03 | 42.7 |
| TraesCS5A01G097100.1 | Wheat | nucleus | 49.17 | 42.61 |
| KRH41601 | Soybean | nucleus, plastid | 45.53 | 42.18 |
| CDX77426 | Canola | cytosol | 23.01 | 41.0 |
| Bra015040.1-P | Field mustard | cytosol | 22.35 | 39.82 |
| KRH48444 | Soybean | nucleus | 47.02 | 39.5 |
| KRH60306 | Soybean | nucleus | 44.87 | 37.59 |
| PGSC0003DMT400070566 | Potato | cytosol | 20.7 | 35.92 |
| Bra015039.1-P | Field mustard | nucleus | 35.26 | 35.8 |
| CDX77427 | Canola | nucleus | 35.1 | 35.63 |
| CDY39555 | Canola | nucleus | 35.26 | 32.92 |
| VIT_04s0008g04380.t01 | Wine grape | cytosol | 44.04 | 31.18 |
| GSMUA_Achr10P... | Banana | extracellular | 11.92 | 30.25 |
| TraesCS6A01G123400.1 | Wheat | nucleus | 29.3 | 23.6 |
| AT2G18870.1 | Thale cress | nucleus, plasma membrane | 8.94 | 22.59 |
| TraesCS7A01G433000.1 | Wheat | cytosol | 29.3 | 21.64 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G108900.1 | EnsemblPlantsGene:TraesCS1A01G108900 | Gene3D:2.60.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:FN3_dom | InterPro:FN3_sf | InterPro:IPR003961 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:Oberon_PHD |
| PANTHER:PTHR21736 | PANTHER:PTHR21736:SF25 | PFAM:PF00041 | PFAM:PF07227 | PFscan:PS50853 | SUPFAM:SSF49265 |
| MapMan:12.3.3.1.2.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:108077333..108080104
Molecular Weight (calculated)
67170.0 Da
IEP (calculated)
7.527
GRAVY (calculated)
-0.390
Length
604 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKSTPVKAS KNSELKKSTA ILTIANGHAC KKDAIGGEHP VHDIKSTGTW ICRNSFCKRC SCCICHQFDD NKDPSLWLVC ASENDDKQCC GSSCHIECAL
101: QQKRVGCFDL QKIIHLDGSY SCASCGKISG ILGYWKRQLV IAKQARRVDI LCHRIYVSYQ LLEGTSCHTE LHNIIQDAKA KLECEVGPLD GMSAKMARGI
201: VSRLSGGSNI LKLCSLAIQK VDELLSSPSP GLHVRGSLPA ACRFKFEDIT SSSLVIILKE TKLASPDTIK GYKLWYWKSR EQPSMDEPVI LSRDERKILV
301: YNLATCTEYS FRIISFSDAD ATIGHSESKC YTASKEVFVK SVTQKATGIC PQTQTTDRSQ ACMSTGFRIR DAGKILRRAW AEEGCFEDMY EGSCDISATE
401: ADQAENSEQG HMLSGACRKL QFNAFSVPDL NAPMPMDIDS SPEKSYDLNN RLFRSNDSGG SEACEAVRSA EPAAVESRPG GKAKQPNGAQ NESCEQDGVS
501: AICRQKQLLK RPRVLDEDYE YCVKVIRWLE CDGHIETDFR LKFLTWLSLR STENEHRVVN TFIKTLIKEP SSLAEQLVDS FGEMINCKRP KVGFGSELWH
601: LDKQ
101: QQKRVGCFDL QKIIHLDGSY SCASCGKISG ILGYWKRQLV IAKQARRVDI LCHRIYVSYQ LLEGTSCHTE LHNIIQDAKA KLECEVGPLD GMSAKMARGI
201: VSRLSGGSNI LKLCSLAIQK VDELLSSPSP GLHVRGSLPA ACRFKFEDIT SSSLVIILKE TKLASPDTIK GYKLWYWKSR EQPSMDEPVI LSRDERKILV
301: YNLATCTEYS FRIISFSDAD ATIGHSESKC YTASKEVFVK SVTQKATGIC PQTQTTDRSQ ACMSTGFRIR DAGKILRRAW AEEGCFEDMY EGSCDISATE
401: ADQAENSEQG HMLSGACRKL QFNAFSVPDL NAPMPMDIDS SPEKSYDLNN RLFRSNDSGG SEACEAVRSA EPAAVESRPG GKAKQPNGAQ NESCEQDGVS
501: AICRQKQLLK RPRVLDEDYE YCVKVIRWLE CDGHIETDFR LKFLTWLSLR STENEHRVVN TFIKTLIKEP SSLAEQLVDS FGEMINCKRP KVGFGSELWH
601: LDKQ
001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH
Arabidopsis Description
VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.