Factsheet for Solyc05g018390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070566	Potato	cytosol	52.86	98.28
KRH39246	Soybean	nucleus, plastid	65.07	64.67
KRH41601	Soybean	nucleus, plastid	64.14	63.65
GSMUA_Achr10P...	Banana	mitochondrion	20.4	62.56
VIT_11s0016g04240.t01	Wine grape	nucleus	64.92	58.25
KRH48444	Soybean	nucleus	64.61	58.14
KRH60306	Soybean	nucleus	63.06	56.59
GSMUA_Achr4P01640_001	Banana	nucleus	55.8	56.14
HORVU5Hr1G026240.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	38.79	52.29
CDX77426	Canola	cytosol	27.05	51.62
Bra015040.1-P	Field mustard	cytosol	26.43	50.44
Os05t0145400-01	Rice	cytosol	45.13	48.11
Zm00001d041715_P003	Maize	nucleus	51.0	47.35
Os12t0533500-01	Rice	nucleus	51.31	46.96
TraesCS5A01G097100.1	Wheat	nucleus	50.54	46.92
TraesCS5D01G109600.1	Wheat	nucleus	50.39	46.77
TraesCS5B01G102800.1	Wheat	nucleus	50.08	46.48
EES17116	Sorghum	nucleus	49.77	46.13
HORVU1Hr1G019570.1	Barley	nucleus	43.59	45.93
TraesCS1A01G108900.1	Wheat	cytosol	42.81	45.86
TraesCS1B01G108200.1	Wheat	cytosol	43.59	45.85
TraesCS1D01G090400.1	Wheat	cytosol	43.43	45.69
Zm00001d023897_P003	Maize	cytosol	50.23	45.14
KXG21293	Sorghum	cytosol	41.58	45.06
Zm00001d024824_P001	Maize	cytosol	32.3	44.37
CDX77427	Canola	nucleus	40.03	43.53
Bra015039.1-P	Field mustard	nucleus	39.41	42.86
HORVU7Hr1G096840.1	Barley	plastid	50.08	42.63
CDY39555	Canola	nucleus	39.88	39.88
GSMUA_Achr10P...	Banana	extracellular	13.6	36.97
Solyc07g018270.2.1	Tomato	cytosol	33.69	29.5
Solyc04g076400.2.1	Tomato	cytosol	27.2	28.85
AT2G18870.1	Thale cress	nucleus, plasma membrane	10.36	28.03

Protein Annotations

EnsemblPlants:Solyc05g018390.2.1	EnsemblPlantsGene:Solyc05g018390.2	Gene3D:2.60.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:FN3_dom	InterPro:FN3_sf	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Oberon_PHD
PANTHER:PTHR21736	PANTHER:PTHR21736:SF17	PFAM:PF07227	PFscan:PS50853	SUPFAM:SSF49265	UniParc:UPI0002767211
UniProt:K4BZ94	MapMan:12.3.3.1.2.2	:	:	:	:

Description

No Description!

Coordinates

chr5:+:20695575..20700500

Molecular Weight (calculated)

71743.9 Da

IEP (calculated)

6.914

GRAVY (calculated)

-0.445

Length

647 amino acids

Sequence
(BLAST)

001: MSEQFPKLSK KQLKTQEQKR VSSSPKDHSS RKQLRKGENP LRILSAAEQY ADVKCSNSWI CKNSACRATI SIDDTFCKRC SCCICHLFDD NKDPSLWLEC
101: TSESGQGDSC GLTCHVECAL QRGKVGVVDL GQLMQLDGSY CCASCGKVSG ILGFWKKQLC VAKDARRVDV LCYRIYLSFR LLDGTSRFKE LHEIIKEAKA
201: KLEMEVGPVN GVSSKMARGI VSRLSIASDV QSLCSIAIEK GDEWLATKTS KLPNSSEGSL PAACKFLFEE VTPSSVVIVL IEVSAASSED VKGYKLWYCT
301: AREDTYTKEP VCVFPRTQRR ILISNLQPCT EYSFRIVSYT EASDVGHSEA KCFTKSVEII HRKPNLVAGL KIQVNQDTGG SSGSKEGFYT GKDIEFDSGF
401: KVRDLGKILR LAWAQQQGCL EGFTGPASTK CCESCTVKPE PVQEERKPST SRQLDLNVAS VPDLNEELTP SSRDEDNCCT LELTVEADDD ATSHDNERNG
501: LARSHGSGDS QNWNQGKNGD VSAGDSQMEG CRKRGASNNG ETHDSDSTLI NGSPIRIRTG GLDENFEYCV KIIRWLECQG LIEKEFRLKL LTWFSLRSTE
601: QERRVVNTFI QTLIDDPSSL AGQLVDTFSE IVSSKRPRNG FCCKLWH

Best Arabidopsis Sequence Match ( AT3G24440.1 )
(BLAST)

001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH

Arabidopsis Description

VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.