CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39246	Soybean	nucleus, plastid	80.95	89.4
KRH41601	Soybean	nucleus, plastid	67.59	74.54
KRH60306	Soybean	nucleus	73.99	73.79
VIT_11s0016g04240.t01	Wine grape	nucleus	66.34	66.16
Solyc05g018390.2.1	Tomato	nucleus	58.14	64.61
GSMUA_Achr10P...	Banana	mitochondrion	17.8	60.66
PGSC0003DMT400070566	Potato	cytosol	27.96	57.76
GSMUA_Achr4P01640_001	Banana	nucleus	51.6	57.7
HORVU5Hr1G026240.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	34.49	51.67
CDX77426	Canola	cytosol	24.34	51.62
Bra015040.1-P	Field mustard	cytosol	23.92	50.74
Os05t0145400-01	Rice	cytosol	42.28	50.08
Os12t0533500-01	Rice	nucleus	47.98	48.8
TraesCS5D01G109600.1	Wheat	nucleus	46.73	48.21
TraesCS5B01G102800.1	Wheat	nucleus	46.73	48.21
TraesCS5A01G097100.1	Wheat	nucleus	46.45	47.92
Zm00001d041715_P003	Maize	nucleus	46.04	47.49
TraesCS1B01G108200.1	Wheat	cytosol	40.47	47.32
TraesCS1D01G090400.1	Wheat	cytosol	40.33	47.15
TraesCS1A01G108900.1	Wheat	cytosol	39.5	47.02
HORVU1Hr1G019570.1	Barley	nucleus	40.06	46.91
EES17116	Sorghum	nucleus	45.48	46.85
KXG21293	Sorghum	cytosol	38.39	46.23
Zm00001d023897_P003	Maize	cytosol	45.9	45.83
Bra015039.1-P	Field mustard	nucleus	37.69	45.55
Zm00001d024824_P001	Maize	cytosol	29.76	45.44
CDX77427	Canola	nucleus	37.41	45.21
HORVU7Hr1G096840.1	Barley	plastid	46.87	44.34
CDY39555	Canola	nucleus	37.41	41.58
GSMUA_Achr10P...	Banana	extracellular	13.21	39.92
KRH02856	Soybean	nucleus	33.66	32.84
KRH19033	Soybean	nucleus	33.1	32.34
KRH16856	Soybean	nucleus	26.7	30.62
KRH72469	Soybean	nucleus	24.48	28.9
AT2G18870.1	Thale cress	nucleus, plasma membrane	9.04	27.2

Protein Annotations

EntrezGene:100780157	MapMan:12.3.3.1.2.2	Gene3D:2.60.40.10	EMBL:ACUP02004237	InterPro:FN3_dom	InterPro:FN3_sf
EnsemblPlantsGene:GLYMA_07G089000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1KIT9	InterPro:IPR003961
InterPro:IPR013783	InterPro:Ig-like_fold	ProteinID:KRH48442.1	ProteinID:KRH48443.1	EnsemblPlants:KRH48444	ProteinID:KRH48444
ProteinID:KRH48444.1	ProteinID:KRH48445.1	InterPro:Oberon_PHD	PFAM:PF00041	PFAM:PF07227	PFscan:PS50853
PANTHER:PTHR21736	PANTHER:PTHR21736:SF17	SUPFAM:SSF49265	UniParc:UPI00023C7F01	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:8296453..8305007

Molecular Weight (calculated)

79624.8 Da

IEP (calculated)

6.816

GRAVY (calculated)

-0.557

Length

719 amino acids

Sequence
(BLAST)

001: MDLEDKFLAK VSGVQSLSSS AQSTPEKNGH SDDASRSSEL LQEFLKSGPK KEILRTCFDK DKKNISSKSR MAETKSTSKI AKKQDSKKVS GISNQPSRKQ
101: HRKGENPVRF VPTPDPPSDF GHSNSWICKN SACRAVLSKD DTFCRRCSCC ICHLFDDNKD PSLWLVCTCE SSQGDSCGLS CHIECALQHE KVGVVDHGQL
201: MQLDGGYCCA SCGKVTGILG CWKKQLNIAK DARRVDVLCY RIYLSYRLLD GTSRFKELHE MVKEAKAKLE TEVGPVNGVS AKMARGIVSR LPIASDVQKL
301: CSLAIEKADE WLATVPNVHP ESREGSLPAA CKVVFEEVTA SSVKIILIEM SNASSGDIKG YKLWYYKSRE ESHTKDPVSV FPKAQRRILI PNLQPCTEYT
401: FRVVSFTDMG DLGHSEAKCF TKSIEILEKN SSSSVAMNKK KENLQTECNS SGSKMEPNPT MEDSGFKVRD LGKILHLSWA QEQGCSEEFC CADKRKCCGQ
501: SETIKPTNPQ ELLPSVSRDL DLNVVSVPDL NEELTPPFES SRDEDNGCTL QQAVEADDDA ASHDLEKNLA RSHGSGGSQT WNHGPTGEVP AVDSRGDACR
601: KRVASTNEET HDCDSTLIND SPLRASDGPF SLDENFEYCV KVIRWLECQG HIKQEFRLKL LTWFSLRSTE QERRVVNTFI QALIDDPSSL AGQLVDSFSD
701: IISNKRPRNG FSNKAVSSS

Best Arabidopsis Sequence Match ( AT3G24440.2 )
(BLAST)

001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANADLV PAACRFHFED IAPKQVTLRL IELPSAVEYD VKGYKLWYFK KGEMPEDDLF VDCSRTERRM
301: VISDLEPCTE YTFRVVSYTE AGIFGHSNAM CFTKSVEILK PVDGKEKRTI DLVGNAQPSD REEKSSISSR FQIGQLGKYV QLAEAQEEGL LEAFYNVDTE
401: KICEPPEEEL PPRRPHGFDL NVVSVPDLNE EFTPPDSSGG EDNGVPLNSL AEADGGDHDD NCDDAVSNGR RKNNNDCLVI SDGSGDDTGF DFLMTRKRKA
501: ISDSNDSENH ECDSSSIDDT LEKCVKVIRW LEREGHIKTT FRVRFLTWFS MSSTAQEQSV VSTFVQTLED DPGSLAGQLV DAFTDVVSTK RPNNGVMTSH

Arabidopsis Description

VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.