Factsheet for GSMUA_Achr10P03490_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015040.1-P	Field mustard	cytosol	47.39	29.5
CDX77426	Canola	cytosol	46.45	28.91
HORVU5Hr1G026240.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	60.19	26.46
GSMUA_Achr4P01640_001	Banana	nucleus	79.15	25.97
Zm00001d024824_P001	Maize	cytosol	54.98	24.63
Os05t0145400-01	Rice	cytosol	58.77	20.43
Solyc05g018390.2.1	Tomato	nucleus	62.56	20.4
KXG21293	Sorghum	cytosol	56.4	19.93
KRH39246	Soybean	nucleus, plastid	60.19	19.51
KRH41601	Soybean	nucleus, plastid	59.24	19.17
Zm00001d041715_P003	Maize	nucleus	63.03	19.08
HORVU1Hr1G019570.1	Barley	nucleus	55.45	19.06
TraesCS1A01G108900.1	Wheat	cytosol	54.5	19.04
TraesCS1D01G090400.1	Wheat	cytosol	55.45	19.02
TraesCS1B01G108200.1	Wheat	cytosol	55.45	19.02
TraesCS5A01G097100.1	Wheat	nucleus	62.56	18.94
EES17116	Sorghum	nucleus	62.56	18.91
TraesCS5D01G109600.1	Wheat	nucleus	62.09	18.79
TraesCS5B01G102800.1	Wheat	nucleus	61.61	18.65
Zm00001d023897_P003	Maize	cytosol	63.51	18.61
Os12t0533500-01	Rice	nucleus	61.14	18.25
KRH48444	Soybean	nucleus	60.66	17.8
KRH60306	Soybean	nucleus	60.66	17.75
HORVU7Hr1G096840.1	Barley	plastid	61.14	16.97
CDX77427	Canola	nucleus	46.45	16.47
Bra015039.1-P	Field mustard	nucleus	46.45	16.47
CDY39555	Canola	nucleus	45.97	14.99
VIT_04s0008g04380.t01	Wine grape	cytosol	54.98	13.6
GSMUA_Achr5P16400_001	Banana	cytosol	36.49	13.34
GSMUA_Achr4P02170_001	Banana	cytosol	37.44	12.02
GSMUA_Achr3P05080_001	Banana	cytosol	36.02	11.88
GSMUA_Achr8P33580_001	Banana	plasma membrane	35.55	11.18
GSMUA_Achr9P13690_001	Banana	plasma membrane	34.6	10.99
PGSC0003DMT400070566	Potato	cytosol	16.11	9.77
AT2G18870.1	Thale cress	nucleus, plasma membrane	6.16	5.44
GSMUA_Achr10P...	Banana	extracellular	0.95	0.84

Protein Annotations

EnsemblPlants:GSMUA_Achr10P03490_001	EnsemblPlants:GSMUA_Achr10T03490_001	EnsemblPlantsGene:GSMUA_Achr10G03490_001	Gene3D:2.60.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:FN3_dom	InterPro:FN3_sf	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold
PANTHER:PTHR21736	PANTHER:PTHR21736:SF17	PFAM:PF00041	PFscan:PS50853	SEG:seg	SUPFAM:SSF49265
UniParc:UPI000294E2F9	UniProt:M0RF26	MapMan:35.1	:	:	:

Description

Putative Protein VERNALIZATION INSENSITIVE 3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G03490_001]

Coordinates

chr10:+:11394817..11396566

Molecular Weight (calculated)

24357.4 Da

IEP (calculated)

8.633

GRAVY (calculated)

-0.211

Length

211 amino acids

Sequence
(BLAST)

001: MCLFKCCLFQ FWKRQLSVAK DARRVDVLCY RIFLSYRLLD GTSCFKELHQ IVEEAKAKLE KEVGPVDGIS AKMARGIVSR LSVAGDVQNL CFAAIEKAGE
101: WMRLRSTDLF KQNHKDSLPA ACRFQFNEIT SSSLIIVIKE TPSTAFDAIK GYKLWYCKTR DQSDKKEPVV FPRSQRRILF TNLQPCTEYA FQIISFTEDE
201: DFGHSESKVF Y

Best Arabidopsis Sequence Match ( AT3G24440.1 )
(BLAST)

001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH

Arabidopsis Description

VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.