Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G108200.1 | Wheat | cytosol | 66.72 | 65.85 |
| TraesCS1D01G090400.1 | Wheat | cytosol | 66.23 | 65.37 |
| TraesCS1A01G108900.1 | Wheat | cytosol | 64.74 | 65.07 |
| KXG21293 | Sorghum | cytosol | 62.77 | 63.82 |
| HORVU1Hr1G019570.1 | Barley | nucleus | 63.43 | 62.7 |
| Zm00001d024824_P001 | Maize | cytosol | 45.96 | 59.24 |
| GSMUA_Achr10P... | Banana | mitochondrion | 20.43 | 58.77 |
| GSMUA_Achr4P01640_001 | Banana | nucleus | 52.72 | 49.77 |
| KRH39246 | Soybean | nucleus, plastid | 49.75 | 46.39 |
| KRH41601 | Soybean | nucleus, plastid | 48.76 | 45.4 |
| Solyc05g018390.2.1 | Tomato | nucleus | 48.11 | 45.13 |
| Os12t0533500-01 | Rice | nucleus | 52.39 | 44.98 |
| CDX77426 | Canola | cytosol | 25.04 | 44.84 |
| Bra015040.1-P | Field mustard | cytosol | 24.88 | 44.54 |
| KRH48444 | Soybean | nucleus | 50.08 | 42.28 |
| KRH60306 | Soybean | nucleus | 48.43 | 40.78 |
| CDX77427 | Canola | nucleus | 35.91 | 36.64 |
| PGSC0003DMT400070566 | Potato | cytosol | 20.76 | 36.21 |
| Bra015039.1-P | Field mustard | nucleus | 35.26 | 35.97 |
| CDY39555 | Canola | nucleus | 35.75 | 33.54 |
| GSMUA_Achr10P... | Banana | extracellular | 13.01 | 33.19 |
| VIT_04s0008g04380.t01 | Wine grape | cytosol | 46.29 | 32.94 |
| Os08t0220600-01 | Rice | cytosol | 29.0 | 27.94 |
| AT2G18870.1 | Thale cress | nucleus, plasma membrane | 9.88 | 25.1 |
| Os02t0152500-01 | Rice | nucleus | 30.64 | 24.83 |
Protein Annotations
| MapMan:12.3.3.1.2.2 | Gene3D:2.60.40.10 | EntrezGene:4337793 | ProteinID:AAT94000.1 | EMBL:AK106860 | ProteinID:BAF16546.1 |
| ProteinID:BAS92240.1 | ProteinID:EEE62308.1 | InterPro:FN3_dom | InterPro:FN3_sf | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR003961 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:Oberon_PHD | EnsemblPlantsGene:Os05g0145400 |
| EnsemblPlants:Os05t0145400-01 | PFAM:PF00041 | PFAM:PF07227 | PFscan:PS50853 | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF25 |
| UniProt:Q6AUH8 | SUPFAM:SSF49265 | UniParc:UPI000040365C | RefSeq:XP_015639862.1 | RefSeq:XP_015639863.1 | : |
Description
VIN3-LIKE 3, VERNALIZATION INSENSITIVE 3-LIKE 4, VERNALIZATION INSENSITIVE 3-LIKE 1Fibronectin, type III-like fold domain containing protein. (Os05t0145400-01)
Coordinates
chr5:-:2612817..2617247
Molecular Weight (calculated)
68017.0 Da
IEP (calculated)
7.141
GRAVY (calculated)
-0.445
Length
607 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKATPVKAS KNLQLQKQSP TNLKETNGHV CKKEVVNGEC PVRDVKCIST WICKNLACKA VVTSEDSFCK RCSCCICHQF DDNKDPSLWL VCASENDDKN
101: CCGSSCHIEC ALQHKRVGCF NLGNIIQLDG SYSCASCGKV SGILGYWKRQ LVIAKDARRV DMLCHRIYLS YRLLGGTTRF KELHGIIEDA KAKLESEVGP
201: LDGMSAKMAR GIVSRLPAGS DLQKLCSLAI ERADELLSSP DLHLQDSLPA ACRFRFVEIT SSSIVIILKE TPLPSSDTIR GYKLWYWKSR EEPSMEEPVV
301: LSKDQRKVLV FNLAPCTQYS FRIISFTDDG ILGHSESKCY TGSKELLFKR TTQNVAGADA HTHRREKTQA FKSTGFKIRD VGKILRQAWT EEGRFEGFCE
401: DMHEASCDRS VTDVEQTENS EQGQLLSGAC RKLQFSTFSV PDLNVEAPVP MDISPDKCYN SKIVPVRSND SGGSETCAVG RSAEAEPPAV ESRPEGCEQD
501: GASTICREKQ LARPRELDED FEYCVQKIRM LECKGHIDND FRMKFLTWFS LRSTENDRRV VTTFIKTLIN EPSGLAEQLV DSFGEAINCK RQRNGFCNEL
601: WHDDKGQ
101: CCGSSCHIEC ALQHKRVGCF NLGNIIQLDG SYSCASCGKV SGILGYWKRQ LVIAKDARRV DMLCHRIYLS YRLLGGTTRF KELHGIIEDA KAKLESEVGP
201: LDGMSAKMAR GIVSRLPAGS DLQKLCSLAI ERADELLSSP DLHLQDSLPA ACRFRFVEIT SSSIVIILKE TPLPSSDTIR GYKLWYWKSR EEPSMEEPVV
301: LSKDQRKVLV FNLAPCTQYS FRIISFTDDG ILGHSESKCY TGSKELLFKR TTQNVAGADA HTHRREKTQA FKSTGFKIRD VGKILRQAWT EEGRFEGFCE
401: DMHEASCDRS VTDVEQTENS EQGQLLSGAC RKLQFSTFSV PDLNVEAPVP MDISPDKCYN SKIVPVRSND SGGSETCAVG RSAEAEPPAV ESRPEGCEQD
501: GASTICREKQ LARPRELDED FEYCVQKIRM LECKGHIDND FRMKFLTWFS LRSTENDRRV VTTFIKTLIN EPSGLAEQLV DSFGEAINCK RQRNGFCNEL
601: WHDDKGQ
001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANADLV PAACRFHFED IAPKQVTLRL IELPSAVEYD VKGYKLWYFK KGEMPEDDLF VDCSRTERRM
301: VISDLEPCTE YTFRVVSYTE AGIFGHSNAM CFTKSVEILK PVDGKEKRTI DLVGNAQPSD REEKSSISSR FQIGQLGKYV QLAEAQEEGL LEAFYNVDTE
401: KICEPPEEEL PPRRPHGFDL NVVSVPDLNE EFTPPDSSGG EDNGVPLNSL AEADGGDHDD NCDDAVSNGR RKNNNDCLVI SDGSGDDTGF DFLMTRKRKA
501: ISDSNDSENH ECDSSSIDDT LEKCVKVIRW LEREGHIKTT FRVRFLTWFS MSSTAQEQSV VSTFVQTLED DPGSLAGQLV DAFTDVVSTK RPNNGVMTSH
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANADLV PAACRFHFED IAPKQVTLRL IELPSAVEYD VKGYKLWYFK KGEMPEDDLF VDCSRTERRM
301: VISDLEPCTE YTFRVVSYTE AGIFGHSNAM CFTKSVEILK PVDGKEKRTI DLVGNAQPSD REEKSSISSR FQIGQLGKYV QLAEAQEEGL LEAFYNVDTE
401: KICEPPEEEL PPRRPHGFDL NVVSVPDLNE EFTPPDSSGG EDNGVPLNSL AEADGGDHDD NCDDAVSNGR RKNNNDCLVI SDGSGDDTGF DFLMTRKRKA
501: ISDSNDSENH ECDSSSIDDT LEKCVKVIRW LEREGHIKTT FRVRFLTWFS MSSTAQEQSV VSTFVQTLED DPGSLAGQLV DAFTDVVSTK RPNNGVMTSH
Arabidopsis Description
VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.