Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G108200.1 | Wheat | cytosol | 86.16 | 86.02 |
| TraesCS1D01G090400.1 | Wheat | cytosol | 85.99 | 85.85 |
| TraesCS1A01G108900.1 | Wheat | cytosol | 84.2 | 85.6 |
| Os05t0145400-01 | Rice | cytosol | 62.7 | 63.43 |
| KXG21293 | Sorghum | cytosol | 58.47 | 60.13 |
| GSMUA_Achr10P... | Banana | mitochondrion | 19.06 | 55.45 |
| Zm00001d024824_P001 | Maize | cytosol | 41.86 | 54.56 |
| GSMUA_Achr4P01640_001 | Banana | nucleus | 50.33 | 48.06 |
| HORVU5Hr1G026240.2 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 36.97 | 47.29 |
| Solyc05g018390.2.1 | Tomato | nucleus | 45.93 | 43.59 |
| KRH39246 | Soybean | nucleus, plastid | 45.93 | 43.32 |
| KRH41601 | Soybean | nucleus, plastid | 45.6 | 42.94 |
| CDX77426 | Canola | cytosol | 23.29 | 42.18 |
| Bra015040.1-P | Field mustard | cytosol | 22.64 | 41.0 |
| KRH48444 | Soybean | nucleus | 46.91 | 40.06 |
| HORVU7Hr1G096840.1 | Barley | plastid | 48.05 | 38.82 |
| KRH60306 | Soybean | nucleus | 44.63 | 38.0 |
| PGSC0003DMT400070566 | Potato | cytosol | 20.68 | 36.49 |
| Bra015039.1-P | Field mustard | nucleus | 33.22 | 34.29 |
| CDX77427 | Canola | nucleus | 33.06 | 34.12 |
| CDY39555 | Canola | nucleus | 33.39 | 31.68 |
| VIT_04s0008g04380.t01 | Wine grape | cytosol | 43.65 | 31.42 |
| GSMUA_Achr10P... | Banana | extracellular | 11.89 | 30.67 |
| HORVU6Hr1G022770.6 | Barley | cytosol, nucleus, plastid | 29.97 | 24.5 |
| AT2G18870.1 | Thale cress | nucleus, plasma membrane | 8.79 | 22.59 |
| HORVU7Hr1G099250.1 | Barley | cytosol | 29.15 | 22.1 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G019570.1 | EnsemblPlantsGene:HORVU1Hr1G019570 | Gene3D:2.60.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:FN3_dom | InterPro:FN3_sf | InterPro:IPR003961 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:Oberon_PHD |
| PANTHER:PTHR21736 | PANTHER:PTHR21736:SF25 | PFAM:PF00041 | PFAM:PF07227 | PFscan:PS50853 | SEG:seg |
| SUPFAM:SSF49265 | UniParc:UPI0002966A56 | UniProt:M0UT20 | MapMan:12.3.3.1.2.2 | : | : |
Description
No Description!
Coordinates
chrchr1H:+:73920478..73928662
Molecular Weight (calculated)
67925.2 Da
IEP (calculated)
8.067
GRAVY (calculated)
-0.358
Length
614 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKSTPVKAS KNSELKKSAA ILTITNGHAC KKDATGRERP VHDIKGTGTW ICRNLACKAV VTAEDSFCKR CSCCICHQFD DNKDPSLWLV CASENDDKQY
101: CGSSCHIECA LKQKRVGCFD LQKIIHLDGS YSCASCGKIS GVLGYWKRQL VIAKGARRVD ILCHRIYVSY QLLEGTSCHN ELHNIIQEAK AKLECEVGPL
201: DGMSAKMARG IVSRLSGGSN ILKLCSLAIQ KVDELLSSPS PGLLRGSLPA ACKFKFVDIT SSSLVIILKE NKLASSDTIK GYKLWYWKSR EQPSMDEPVI
301: LPRDQRKILV YNLATCTEYS FRIISFTDAE AAIGHSESKC YTASKEVFIK SVTQNATGTC PQTQTADRSQ ACMSTGFRIR DVGKILRRAW AEEGYCEDMY
401: AGSCDISATE ANQAGNSEQG HLLSGACRKL QFNAFSVPDL NAPMPMDIDS SPEKSYDLNN RLLRSNDSGG SEACEAVRSA EPAAVESRPG GKAKQPNGAQ
501: NESCEQDGVS AICRQKQLLR KPRVLDEDYE YCVKVIRWLE CDGHIETDFR LKFLTWLSLR STENEHRIVN TFIKTLIKEP SSLAEQLVDS FGEMVNCKRP
601: KVGFGSGLWH LDKQ
101: CGSSCHIECA LKQKRVGCFD LQKIIHLDGS YSCASCGKIS GVLGYWKRQL VIAKGARRVD ILCHRIYVSY QLLEGTSCHN ELHNIIQEAK AKLECEVGPL
201: DGMSAKMARG IVSRLSGGSN ILKLCSLAIQ KVDELLSSPS PGLLRGSLPA ACKFKFVDIT SSSLVIILKE NKLASSDTIK GYKLWYWKSR EQPSMDEPVI
301: LPRDQRKILV YNLATCTEYS FRIISFTDAE AAIGHSESKC YTASKEVFIK SVTQNATGTC PQTQTADRSQ ACMSTGFRIR DVGKILRRAW AEEGYCEDMY
401: AGSCDISATE ANQAGNSEQG HLLSGACRKL QFNAFSVPDL NAPMPMDIDS SPEKSYDLNN RLLRSNDSGG SEACEAVRSA EPAAVESRPG GKAKQPNGAQ
501: NESCEQDGVS AICRQKQLLR KPRVLDEDYE YCVKVIRWLE CDGHIETDFR LKFLTWLSLR STENEHRIVN TFIKTLIKEP SSLAEQLVDS FGEMVNCKRP
601: KVGFGSGLWH LDKQ
001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH
Arabidopsis Description
VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.