Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G090400.1 | Wheat | cytosol | 98.21 | 98.21 |
| TraesCS1A01G108900.1 | Wheat | cytosol | 93.98 | 95.7 |
| HORVU1Hr1G019570.1 | Barley | nucleus | 86.02 | 86.16 |
| Os05t0145400-01 | Rice | cytosol | 65.85 | 66.72 |
| KXG21293 | Sorghum | cytosol | 61.14 | 62.98 |
| GSMUA_Achr10P... | Banana | mitochondrion | 19.02 | 55.45 |
| Zm00001d024824_P001 | Maize | cytosol | 42.11 | 54.99 |
| GSMUA_Achr4P01640_001 | Banana | nucleus | 50.73 | 48.52 |
| KRH39246 | Soybean | nucleus, plastid | 46.34 | 43.78 |
| Solyc05g018390.2.1 | Tomato | nucleus | 45.85 | 43.59 |
| KRH41601 | Soybean | nucleus, plastid | 45.85 | 43.25 |
| TraesCS5B01G102800.1 | Wheat | nucleus | 48.62 | 42.9 |
| CDX77426 | Canola | cytosol | 22.93 | 41.59 |
| Bra015040.1-P | Field mustard | cytosol | 22.44 | 40.71 |
| KRH48444 | Soybean | nucleus | 47.32 | 40.47 |
| KRH60306 | Soybean | nucleus | 44.88 | 38.28 |
| Bra015039.1-P | Field mustard | nucleus | 34.96 | 36.13 |
| CDX77427 | Canola | nucleus | 34.8 | 35.97 |
| PGSC0003DMT400070566 | Potato | cytosol | 20.33 | 35.92 |
| GSMUA_Achr10P... | Banana | extracellular | 12.85 | 33.19 |
| CDY39555 | Canola | nucleus | 34.8 | 33.08 |
| VIT_04s0008g04380.t01 | Wine grape | cytosol | 43.74 | 31.54 |
| TraesCS6B01G151600.2 | Wheat | nucleus | 28.78 | 23.6 |
| AT2G18870.1 | Thale cress | nucleus, plasma membrane | 9.11 | 23.43 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G108200.1 | EnsemblPlantsGene:TraesCS1B01G108200 | Gene3D:2.60.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:FN3_dom | InterPro:FN3_sf | InterPro:IPR003961 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:Oberon_PHD |
| PANTHER:PTHR21736 | PANTHER:PTHR21736:SF25 | PFAM:PF00041 | PFAM:PF07227 | PFscan:PS50853 | SUPFAM:SSF49265 |
| MapMan:12.3.3.1.2.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:120405514..120408595
Molecular Weight (calculated)
68265.4 Da
IEP (calculated)
7.517
GRAVY (calculated)
-0.345
Length
615 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKSTPVKAS KNSELKKSAA ILTIANGHAC KKDAIGGEHP VHDIKSTGTW ICRNLACKAV VTAEDSFCKR CSCCICHQFD DNKDPSLWLV CASENDDKQC
101: CGSSCHIECA LQQKRVGCFD LQKIIHLDGS YSCASCGKIS GILGYWKRQL VIAKQARRVD ILCHRIYVSY QLLEGTSCHT ELHNIIQDAK AKLECEVGPL
201: DGMSAKMARG IVSRLSGGSN ILKLCSLAIQ KVDELLSSPS PGLHLRGSLP AACRFNFVDI TSSSLVIILK ETKLASSDTI KGYKLWYWKS REQPSMDEPV
301: ILSRDQRKVL VYNLATCTEY SFRIISFTDA DATIGHSESK CYTASKEVFV KSVTQKATQI CPQTQITDRS QACMSTGFRI RDAGKILRRA WAEEGCFEDM
401: YEGSCDISAT EADQAENSEQ GHFLSGACRK LQFNAFSVPD LNAPMPMDID SSPEKSYDLN NRLLRSNDSG GSEACEAVRS AEPAAVESRP GGKAKQPNGA
501: QNESCEQDGV SAICRQKQLL KRPRVLDEDY EYCVKVIRWL ECDGHIETDF RLKFLTWLSL RSTENEHRVV NTFIKTLIKE PSSLAEQLVD SFGEMINCKR
601: PKVGFGSELW HLDKQ
101: CGSSCHIECA LQQKRVGCFD LQKIIHLDGS YSCASCGKIS GILGYWKRQL VIAKQARRVD ILCHRIYVSY QLLEGTSCHT ELHNIIQDAK AKLECEVGPL
201: DGMSAKMARG IVSRLSGGSN ILKLCSLAIQ KVDELLSSPS PGLHLRGSLP AACRFNFVDI TSSSLVIILK ETKLASSDTI KGYKLWYWKS REQPSMDEPV
301: ILSRDQRKVL VYNLATCTEY SFRIISFTDA DATIGHSESK CYTASKEVFV KSVTQKATQI CPQTQITDRS QACMSTGFRI RDAGKILRRA WAEEGCFEDM
401: YEGSCDISAT EADQAENSEQ GHFLSGACRK LQFNAFSVPD LNAPMPMDID SSPEKSYDLN NRLLRSNDSG GSEACEAVRS AEPAAVESRP GGKAKQPNGA
501: QNESCEQDGV SAICRQKQLL KRPRVLDEDY EYCVKVIRWL ECDGHIETDF RLKFLTWLSL RSTENEHRVV NTFIKTLIKE PSSLAEQLVD SFGEMINCKR
601: PKVGFGSELW HLDKQ
001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH
Arabidopsis Description
VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.