Factsheet for VIT_04s0008g04380.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	mitochondrion	13.6	54.98
VIT_11s0016g04240.t01	Wine grape	nucleus	46.31	54.78
GSMUA_Achr4P01640_001	Banana	nucleus	40.91	54.28
HORVU5Hr1G026240.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	28.96	51.46
Os12t0533500-01	Rice	nucleus	39.98	48.23
TraesCS5D01G109600.1	Wheat	nucleus	38.45	47.06
TraesCS5A01G097100.1	Wheat	nucleus	38.34	46.92
TraesCS5B01G102800.1	Wheat	nucleus	38.1	46.63
CDX77426	Canola	cytosol	18.41	46.31
Os05t0145400-01	Rice	cytosol	32.94	46.29
Bra015040.1-P	Field mustard	cytosol	18.29	46.02
Zm00001d041715_P003	Maize	nucleus	37.4	45.77
EES17116	Sorghum	nucleus	37.4	45.7
Zm00001d023897_P003	Maize	cytosol	37.98	45.0
TraesCS1A01G108900.1	Wheat	cytosol	31.18	44.04
TraesCS1B01G108200.1	Wheat	cytosol	31.54	43.74
KXG21293	Sorghum	cytosol	30.6	43.72
HORVU1Hr1G019570.1	Barley	nucleus	31.42	43.65
HORVU7Hr1G096840.1	Barley	plastid	38.69	43.42
TraesCS1D01G090400.1	Wheat	cytosol	31.18	43.25
Zm00001d024824_P001	Maize	cytosol	23.21	42.04
CDX77427	Canola	nucleus	29.19	41.85
Bra015039.1-P	Field mustard	nucleus	28.96	41.51
CDY39555	Canola	nucleus	29.31	38.64
VIT_18s0001g07650.t01	Wine grape	cytosol	23.92	37.29
GSMUA_Achr10P...	Banana	extracellular	10.2	36.55
VIT_11s0052g00830.t01	Wine grape	nucleus	26.14	30.22

Protein Annotations

EntrezGene:100259403	wikigene:100259403	MapMan:12.3.3.1.2.2	Gene3D:2.60.40.10	ProteinID:CCB46752	ProteinID:CCB46752.1
UniProt:F6H3G4	InterPro:FN3_dom	InterPro:FN3_sf	EMBL:FN595231	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015074	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	EntrezGene:LOC100259403
wikigene:LOC100259403	InterPro:Oberon_PHD	PFAM:PF00041	PFAM:PF07227	PFAM:PF13966	PFscan:PS50853
PANTHER:PTHR21736	PANTHER:PTHR21736:SF17	InterPro:RVT-Znf	SUPFAM:SSF49265	TIGR:TC61557	UniParc:UPI00021083D1
ArrayExpress:VIT_04s0008g04380	EnsemblPlantsGene:VIT_04s0008g04380	EnsemblPlants:VIT_04s0008g04380.t01	unigene:Vvi.14287	RefSeq:XP_002281934	RefSeq:XP_002281934.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:3778171..3785740

Molecular Weight (calculated)

96621.8 Da

IEP (calculated)

6.260

GRAVY (calculated)

-0.372

Length

853 amino acids

Sequence
(BLAST)

001: MWDHSRGEGV WSPRFSRPFN DWEVEEVERL LVIIQGRRLN PLTEDCLLWK ETKDGIFSVK SLYSILDSRR GVQFPINIIW NPCVPTKVSF FAWEAFWGKV
101: LTLDQLKKRG RCLANRCFLC CEEEESIDHI LIQCSKARVL WELVFALFGV SWVLPYSVRD TLSGWSGFNM GKKRRKVWKA VPSCIFWAVW KERNRIAFDN
201: EELSLNRMTE QFVKMSNRNQ EQRRHSSQTT GTQPSRKQPR KGGNPVRLPS AAGLTQDEES SNTRICKNSA CRAVLSLDDI FCKRCSCCIC HSFDDNKDPS
301: LWLVCTSEFD KGDTCGLSCH IECAILRQKV GVVDLGQLMQ LDGTYCCASC GKVTEILGCW KKQFIIAKEA RRVDVLCYRI SLCYRLLDGT SRFKELHKVV
401: SDAKAKLETE VGPISGDSAK MARGIVSRLS VAADVQNLCS LAIEKVDARL NSISTANFNH RENSLGAAFI FLFEEVTASS LVLVLDEPDA SPSDAVKGYM
501: LWYCPSREEP SSKEPMRIFP RTQKRVLISN LQPGIEYLFR IIPYTDSGSL GHFEAKCFTR NVEINHKNFE SEVVVPQNEI SPDNERLDTR NETVPRTSSF
601: KVQDLGKVLY LTSAEEQGSL EGLCSADVEE CSGGSSAMRY ETPEDEKPMP NSRELDLNVV SVPDLNAELT PPLESSRDED NECTLEQVVE AEDDAVSHGL
701: EKNDQSRSSG SHDSQTCKIR AIREVPAVES RTELCRKQTL SSKSEAYDCV STLINGSPLQ VCAGSGHLDR SYEYCVKIIR WLECEGHIGQ EFRMKFLTWF
801: SLRSTEQERR VVHAFIQTLI EDPSSLAGQL IDSFSDIVKS KRTRNGFCSE LWH

Best Arabidopsis Sequence Match ( AT3G24440.1 )
(BLAST)

001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH

Arabidopsis Description

VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.