Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P01640_001 | Banana | nucleus | 55.46 | 20.53 |
| Bra015040.1-P | Field mustard | cytosol | 23.53 | 16.52 |
| CDX77426 | Canola | cytosol | 23.53 | 16.52 |
| TraesCS5B01G102800.1 | Wheat | nucleus | 42.86 | 14.63 |
| TraesCS5D01G109600.1 | Wheat | nucleus | 42.44 | 14.49 |
| TraesCS5A01G097100.1 | Wheat | nucleus | 42.44 | 14.49 |
| Os12t0533500-01 | Rice | nucleus | 42.02 | 14.14 |
| Solyc05g018390.2.1 | Tomato | nucleus | 36.97 | 13.6 |
| HORVU7Hr1G096840.1 | Barley | plastid | 42.44 | 13.29 |
| KRH48444 | Soybean | nucleus | 39.92 | 13.21 |
| KRH39246 | Soybean | nucleus, plastid | 35.71 | 13.06 |
| Os05t0145400-01 | Rice | cytosol | 33.19 | 13.01 |
| KRH41601 | Soybean | nucleus, plastid | 35.29 | 12.88 |
| TraesCS1D01G090400.1 | Wheat | cytosol | 33.19 | 12.85 |
| TraesCS1B01G108200.1 | Wheat | cytosol | 33.19 | 12.85 |
| KRH60306 | Soybean | nucleus | 38.66 | 12.76 |
| EES17116 | Sorghum | nucleus | 37.4 | 12.75 |
| KXG21293 | Sorghum | cytosol | 31.09 | 12.4 |
| Zm00001d041715_P003 | Maize | nucleus | 36.13 | 12.34 |
| Zm00001d023897_P003 | Maize | cytosol | 36.13 | 11.94 |
| TraesCS1A01G108900.1 | Wheat | cytosol | 30.25 | 11.92 |
| HORVU1Hr1G019570.1 | Barley | nucleus | 30.67 | 11.89 |
| GSMUA_Achr9P13690_001 | Banana | plasma membrane | 31.51 | 11.3 |
| Bra015039.1-P | Field mustard | nucleus | 28.15 | 11.26 |
| CDX77427 | Canola | nucleus | 28.15 | 11.26 |
| GSMUA_Achr3P05080_001 | Banana | cytosol | 29.83 | 11.09 |
| GSMUA_Achr8P33580_001 | Banana | plasma membrane | 30.25 | 10.73 |
| CDY39555 | Canola | nucleus | 28.15 | 10.36 |
| GSMUA_Achr4P02170_001 | Banana | cytosol | 28.57 | 10.35 |
| VIT_04s0008g04380.t01 | Wine grape | cytosol | 36.55 | 10.2 |
| GSMUA_Achr5P16400_001 | Banana | cytosol | 24.37 | 10.05 |
| AT2G18870.1 | Thale cress | nucleus, plasma membrane | 4.2 | 4.18 |
| Zm00001d024824_P001 | Maize | cytosol | 2.1 | 1.06 |
| GSMUA_Achr10P... | Banana | mitochondrion | 0.84 | 0.95 |
| HORVU5Hr1G026240.2 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 0.42 | 0.21 |
| PGSC0003DMT400070566 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P03480_001 | EnsemblPlants:GSMUA_Achr10T03480_001 | EnsemblPlantsGene:GSMUA_Achr10G03480_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Oberon_PHD | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF17 | PFAM:PF07227 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000295C951 | UniProt:M0RF25 | MapMan:35.1 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G03480_001]
Coordinates
chr10:+:11382215..11383206
Molecular Weight (calculated)
26770.2 Da
IEP (calculated)
8.528
GRAVY (calculated)
-0.227
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MWNFLKTTSL LFWPLPFHYC FTTMFDFLFK AILLIFYCFS YILLTTENFR RNPAGLPKVH WRKYTSQSCL DKETKQSSSS KCKTKEVNKA TSKGCKKLDL
101: KKLSLDHSAL SNNQAFKTQP RKGEHPVHVP SAENSQNFRS ANTWICKNSA CKAVLTSDDT FCKRCSCCIC HLFDDNKDPS LWLVCTSESG DKDYCGLSCH
201: VECALQCQKA GVFSLGQSML LDGSYCCASC GKVSGIIG
101: KKLSLDHSAL SNNQAFKTQP RKGEHPVHVP SAENSQNFRS ANTWICKNSA CKAVLTSDDT FCKRCSCCIC HLFDDNKDPS LWLVCTSESG DKDYCGLSCH
201: VECALQCQKA GVFSLGQSML LDGSYCCASC GKVSGIIG
001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH
Arabidopsis Description
VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.