CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023897_P003	Maize	cytosol	88.68	85.97
HORVU5Hr1G026240.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	49.71	72.29
TraesCS5D01G109600.1	Wheat	nucleus	71.92	72.02
TraesCS5B01G102800.1	Wheat	nucleus	71.92	72.02
TraesCS5A01G097100.1	Wheat	nucleus	71.92	72.02
Os12t0533500-01	Rice	nucleus	69.77	68.88
HORVU7Hr1G096840.1	Barley	plastid	71.92	66.05
GSMUA_Achr10P...	Banana	mitochondrion	18.91	62.56
GSMUA_Achr4P01640_001	Banana	nucleus	51.86	56.3
KXG21293	Sorghum	cytosol	43.12	50.42
Solyc05g018390.2.1	Tomato	nucleus	46.13	49.77
KRH39246	Soybean	nucleus, plastid	44.27	47.47
KRH41601	Soybean	nucleus, plastid	44.27	47.39
KRH48444	Soybean	nucleus	46.85	45.48
Bra015040.1-P	Field mustard	cytosol	22.06	45.43
KRH60306	Soybean	nucleus	46.7	45.22
CDX77426	Canola	cytosol	21.78	44.84
PGSC0003DMT400070566	Potato	cytosol	21.92	43.97
CDX77427	Canola	nucleus	34.1	40.0
Bra015039.1-P	Field mustard	nucleus	33.67	39.5
VIT_04s0008g04380.t01	Wine grape	cytosol	45.7	37.4
GSMUA_Achr10P...	Banana	extracellular	12.75	37.4
CDY39555	Canola	nucleus	33.81	36.48
KXG29488	Sorghum	nucleus	31.09	28.52
OQU80080	Sorghum	cytosol	25.5	27.99
AT2G18870.1	Thale cress	nucleus, plasma membrane	8.74	25.52

Protein Annotations

MapMan:12.3.3.1.2.2	Gene3D:2.60.40.10	EntrezGene:8064630	UniProt:C5YPA1	EnsemblPlants:EES17116	ProteinID:EES17116
ProteinID:EES17116.1	InterPro:FN3_dom	InterPro:FN3_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Oberon_PHD	PFAM:PF00041	PFAM:PF07227
PFscan:PS50853	PANTHER:PTHR21736	PANTHER:PTHR21736:SF17	SMART:SM00060	EnsemblPlantsGene:SORBI_3008G115000	SUPFAM:SSF49265
unigene:Sbi.18589	UniParc:UPI0001A88551	RefSeq:XP_002443278.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:52390177..52396758

Molecular Weight (calculated)

76989.8 Da

IEP (calculated)

6.494

GRAVY (calculated)

-0.482

Length

698 amino acids

Sequence
(BLAST)

001: MAASGGDAPE LAVITNVCNA ANAPEENRLA GDSNTISENA QESLSSLPEQ ESNDASVNTE KKEPGISKCK SVEEIPKTVT IKRCKNIDSK KVSLNNNNNP
101: SFTGSPALKK QPTKGGQLFQ LHENGMSQDT KPPSTRICIN SACKAVFNSD NAFCKRCSCC ICHGFDDNKD PSLWLVCSSE TGDQDCCGSS CHIECALKHR
201: KAGCIELGQS IQLDGNYCCA ACGKVIGILG FWKRQLVVAK DARRVDNLCS RIYLSHRLLD GTTRFKELHQ IVEDAKAKLE SEVGPLDGTS SKMARGIVGR
301: LPVAADVQKL CSLAIEKADE CLSSNIQSET KQNDTLPSAC RFKFEDITAS SLVLVLKEAV SSQYHTIKGY KLWYWNSREA PYTGEPAVFP KDQRRILISN
401: LQPCTEYSFR IISFTEDGEL GHSESKIFTK SVEIIHKNTE HGAEGCSSSA KRVGKRQNVR SLGFQVRQLG NVFRKAQTEE NGYPNALCKD EIEDSCDQSD
501: SLIPDKDQVP RGASRKLNLN ETSVPDLNAE VVMPTECCQI ENGCSSGKNA FTKSNGCGDS ETCAEGHVGD APAMESRSQS RKQASDLEQE TCVDDSNLVA
601: RAARLFAPKL GQLDDNYEYC VKIIRWLECS GLIEKDFRMK FLTWFSLRST EQERRVVITF IRTLIDEPSS LAAQLLDSFE EIVTSKRLRT GFCTKLWH

Best Arabidopsis Sequence Match ( AT3G24440.2 )
(BLAST)

001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANADLV PAACRFHFED IAPKQVTLRL IELPSAVEYD VKGYKLWYFK KGEMPEDDLF VDCSRTERRM
301: VISDLEPCTE YTFRVVSYTE AGIFGHSNAM CFTKSVEILK PVDGKEKRTI DLVGNAQPSD REEKSSISSR FQIGQLGKYV QLAEAQEEGL LEAFYNVDTE
401: KICEPPEEEL PPRRPHGFDL NVVSVPDLNE EFTPPDSSGG EDNGVPLNSL AEADGGDHDD NCDDAVSNGR RKNNNDCLVI SDGSGDDTGF DFLMTRKRKA
501: ISDSNDSENH ECDSSSIDDT LEKCVKVIRW LEREGHIKTT FRVRFLTWFS MSSTAQEQSV VSTFVQTLED DPGSLAGQLV DAFTDVVSTK RPNNGVMTSH

Arabidopsis Description

VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.