CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015039.1-P	Field mustard	nucleus	96.64	96.64
CDY39555	Canola	nucleus	93.78	86.24
AT3G24440.1	Thale cress	nucleus	71.09	70.27
CDX77426	Canola	cytosol	39.16	68.73
GSMUA_Achr10P...	Banana	mitochondrion	16.47	46.45
KRH39246	Soybean	nucleus, plastid	45.38	41.47
GSMUA_Achr4P01640_001	Banana	nucleus	43.53	40.28
Solyc05g018390.2.1	Tomato	nucleus	43.53	40.03
KRH41601	Soybean	nucleus, plastid	43.19	39.42
KRH48444	Soybean	nucleus	45.21	37.41
KXG21293	Sorghum	cytosol	37.31	37.19
VIT_11s0016g04240.t01	Wine grape	nucleus	44.71	36.89
HORVU5Hr1G026240.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.75	36.88
KRH60306	Soybean	nucleus	44.2	36.48
CDY29247	Canola	cytosol, nucleus, plastid	24.03	36.2
Os05t0145400-01	Rice	cytosol	36.64	35.91
Zm00001d024824_P001	Maize	cytosol	28.24	35.67
TraesCS1D01G090400.1	Wheat	cytosol	36.47	35.28
TraesCS1A01G108900.1	Wheat	cytosol	35.63	35.1
CDY59604	Canola	nucleus	23.87	35.06
TraesCS1B01G108200.1	Wheat	cytosol	35.97	34.8
Os12t0533500-01	Rice	nucleus	40.67	34.23
EES17116	Sorghum	nucleus	40.0	34.1
TraesCS5D01G109600.1	Wheat	nucleus	39.83	34.0
Zm00001d041715_P003	Maize	nucleus	39.66	33.86
TraesCS5B01G102800.1	Wheat	nucleus	39.66	33.86
TraesCS5A01G097100.1	Wheat	nucleus	39.66	33.86
HORVU1Hr1G019570.1	Barley	nucleus	34.12	33.06
Zm00001d023897_P003	Maize	cytosol	39.66	32.78
CDY14184	Canola	cytosol	27.23	31.83
PGSC0003DMT400070566	Potato	cytosol	18.32	31.32
HORVU7Hr1G096840.1	Barley	plastid	40.0	31.32
CDY51654	Canola	cytosol	27.39	30.35
VIT_04s0008g04380.t01	Wine grape	cytosol	41.85	29.19
GSMUA_Achr10P...	Banana	extracellular	11.26	28.15
CDY03544	Canola	nucleus	29.41	28.04
CDX68633	Canola	nucleus	29.24	28.02
CDY28168	Canola	nucleus	30.08	27.97
CDX72220	Canola	nucleus	29.24	27.84
CDY11872	Canola	mitochondrion	25.38	26.54
CDX88618	Canola	mitochondrion	25.38	25.95
CDY47942	Canola	nucleus	24.03	25.4
CDY42262	Canola	nucleus	23.7	25.04

Protein Annotations

EnsemblPlants:CDX77427	EnsemblPlantsGene:GSBRNA2T00128276001	Gene3D:2.60.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:FN3_dom	InterPro:FN3_sf	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Oberon_PHD
PANTHER:PTHR21736	PANTHER:PTHR21736:SF17	PFAM:PF07227	PFscan:PS50853	ProteinID:CDX77427	ProteinID:CDX77427.1
SEG:seg	SUPFAM:SSF49265	UniParc:UPI0004EDEDE4	MapMan:12.3.3.1.2.2	:	:

Description

BnaA07g05650D

Coordinates

chrLK031811:+:511824..514098

Molecular Weight (calculated)

66307.1 Da

IEP (calculated)

4.633

GRAVY (calculated)

-0.590

Length

595 amino acids

Sequence
(BLAST)

001: METKSKISQS RKSHNKSSKK HDANKKHQQQ EDDAGITNSW ICKNASCRAN VPKDDSFCKR CSCCVCHSFD ENKDPSLWLV CESEKPNDVE FCGLSCHVEC
101: AFREDKVGVT SIGDLMKLDG CFCCYSCGKV SEILGCWKKQ LVAAKDARRR DVLCYRIELS YRLLDGTCRF SELHEVVKAA KSMLEDEVGP LDGPSARTDR
201: GIVSRLPVAS EVQELCTSAI KMAEDWSANV ARDSIPAACR FHFEDVASTR VTLRLIELPS AEECGVKGYR LWCFKKGETP EDDQFLDLSR AERRILLADL
301: DPCKEYMFRV VSYTEAGCLG HSNARCVTKS VEILRDNSVE GRTKRRIDLL GNDQASDREE KSSISSGFQI GQLGKYVELA EAQEDGLLDA FYDVDTDKSS
401: EPEVEVPPRR PLGFDLNVVS VPDLNEEFTQ PDSSGGEDNG VPLDSLAEAD VANGNGNYND DDDDTVSNGT QKNNNCLVRS DGSGDDPEFD FLMTRKRKAD
501: SNSHGSENNE CDSSPIDDTI EKCMKVVRWL ECEGHIEKTF RIRFLTWFGL SSTAQEQSVV STFVQTLEDD PSSLAEQLLH VFSDVISNKR PNNGS

Best Arabidopsis Sequence Match ( AT3G24440.1 )
(BLAST)

001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH

Arabidopsis Description

VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.