Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59604 | Canola | nucleus | 94.43 | 92.1 |
| Bra024456.1-P | Field mustard | nucleus | 96.2 | 88.17 |
| CDY14184 | Canola | cytosol | 57.72 | 44.79 |
| CDY51654 | Canola | cytosol | 56.46 | 41.53 |
| CDX68633 | Canola | nucleus | 61.27 | 38.97 |
| AT2G18880.1 | Thale cress | nucleus | 52.15 | 38.94 |
| CDY03544 | Canola | nucleus | 61.27 | 38.78 |
| CDY28168 | Canola | nucleus | 61.77 | 38.12 |
| CDX72220 | Canola | nucleus | 58.23 | 36.8 |
| CDY47942 | Canola | nucleus | 44.81 | 31.44 |
| CDY42262 | Canola | nucleus | 44.3 | 31.08 |
| CDY11872 | Canola | mitochondrion | 44.3 | 30.76 |
| CDX88618 | Canola | mitochondrion | 45.06 | 30.58 |
| VIT_11s0052g00830.t01 | Wine grape | nucleus | 54.94 | 29.4 |
| GSMUA_Achr3P05080_001 | Banana | cytosol | 45.32 | 27.97 |
| KRH02856 | Soybean | nucleus | 52.15 | 27.95 |
| KRH19033 | Soybean | nucleus | 51.39 | 27.58 |
| GSMUA_Achr9P13690_001 | Banana | plasma membrane | 45.82 | 27.26 |
| GSMUA_Achr4P02170_001 | Banana | cytosol | 44.3 | 26.64 |
| CDX77426 | Canola | cytosol | 22.78 | 26.55 |
| Solyc07g018270.2.1 | Tomato | cytosol | 49.11 | 26.25 |
| GSMUA_Achr5P16400_001 | Banana | cytosol | 37.22 | 25.48 |
| CDX77427 | Canola | nucleus | 36.2 | 24.03 |
| Os02t0152500-01 | Rice | nucleus | 44.05 | 23.23 |
| Zm00001d053875_P001 | Maize | cytosol, plastid | 42.78 | 22.24 |
| KXG29488 | Sorghum | nucleus | 42.78 | 22.21 |
| TraesCS7D01G424600.1 | Wheat | cytosol, nucleus, plasma membrane | 46.08 | 22.2 |
| HORVU6Hr1G022770.6 | Barley | cytosol, nucleus, plastid | 42.03 | 22.1 |
| HORVU7Hr1G099250.1 | Barley | cytosol | 45.32 | 22.1 |
| TraesCS7A01G433000.1 | Wheat | cytosol | 45.57 | 22.0 |
| TraesCS6A01G123400.1 | Wheat | nucleus | 41.77 | 22.0 |
| CDY39555 | Canola | nucleus | 35.95 | 21.95 |
| TraesCS6B01G151600.2 | Wheat | nucleus | 41.52 | 21.87 |
| TraesCS6D01G113600.1 | Wheat | nucleus | 41.52 | 21.87 |
| Zm00001d015293_P015 | Maize | nucleus, plastid | 43.29 | 20.24 |
| PGSC0003DMT400019884 | Potato | cytosol | 12.66 | 13.55 |
Protein Annotations
| EnsemblPlants:CDY29247 | EnsemblPlantsGene:GSBRNA2T00042180001 | InterPro:Oberon_PHD | ncoils:Coil | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF13 |
| PFAM:PF07227 | ProteinID:CDY29247 | ProteinID:CDY29247.1 | SEG:seg | UniParc:UPI0004EE33C4 | UniProt:A0A078GVT3 |
| MapMan:12.3.3.1.2.2 | : | : | : | : | : |
Description
BnaA06g25100DBnaA06g25100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVT3]
Coordinates
chrLK032233:+:512877..514249
Molecular Weight (calculated)
44152.6 Da
IEP (calculated)
7.799
GRAVY (calculated)
-0.499
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVDEKRKLV HELSKDSDLA FEALQVWTHE EIRQVLCAEL GKERKYKNLT KAQLINSLLR TRDSSTTTTT KTTKRNSKRQ RKNATPTRYV SAESVNKAKG
101: GIYCKNLACQ AVLRQEDLFC QRCSCCVCHK YDDNKDPSLW LTCGSDPPFP GESCGLSCHL DCAFKNEKSG LKPSSDVDGC FYCVSCGKTN SLLECWKKQL
201: LIAKETRSVD VLCNRLVLAQ KLLKGTEKYR KLSETVEEAV KSLETELCGG PLTDLPSAMC RGNVNRLGSA PKVKDLCSSA LKSLQDTPDV DETKVSTRTL
301: QEEEEETVSE KVVNGKSSTS CGFGLEDCVK IMRQLECSGY VDKSFRQEFL TWYSLRASAQ EMNVVKTFID AFGDDSVALA EQLVDTFSDC ISRKR
101: GIYCKNLACQ AVLRQEDLFC QRCSCCVCHK YDDNKDPSLW LTCGSDPPFP GESCGLSCHL DCAFKNEKSG LKPSSDVDGC FYCVSCGKTN SLLECWKKQL
201: LIAKETRSVD VLCNRLVLAQ KLLKGTEKYR KLSETVEEAV KSLETELCGG PLTDLPSAMC RGNVNRLGSA PKVKDLCSSA LKSLQDTPDV DETKVSTRTL
301: QEEEEETVSE KVVNGKSSTS CGFGLEDCVK IMRQLECSGY VDKSFRQEFL TWYSLRASAQ EMNVVKTFID AFGDDSVALA EQLVDTFSDC ISRKR
001: MASFHKGAAG DSMGSSKMSF DQRRQLVLKL SKESEREFKE VLKDWSCNEI RELLRAESKK DIKYTGLTKD EIITRLFNIV SKKNTRDHEV EEIIPSPKRQ
101: KRDLVTPLAK AKGKGKMYCQ NLACQNKLRE EATFCKRCSC CICFKYDDNK DPSLWLTCNS DSQFDGESCG LSCHLNCAFD SEKSGLKEDT PSSDIDGCFN
201: CVSCGKTNSK IECLKKQLII ANEERRVGVF CYRILLAHKL LKGTKKYIIV SEEVEKAVMH LKNEFGVPIS CLPSKMSRGL VNRLCCAEKV KKHCSSALKE
301: LDGLPLPSTI QGSMKIRIES VLATSVTFDI EAEESFSWGD TNHYRMVYRK VSEKHSSKDL TRELFSTSSH QRFTVMELTP ATEYWFKIVS FSGVEELSVD
401: EFIVSTKTLQ DEEVAAVLLN MSNCNNANKM EKSGSCSFGF EECVNLIRQL ECSGQVKSDF RKKFLTWYCL KATDKEKHVV EIFVDTFKDD KEALAKQLID
501: TFSDCITRKH PEIGGGSESA GVSLILLQD
101: KRDLVTPLAK AKGKGKMYCQ NLACQNKLRE EATFCKRCSC CICFKYDDNK DPSLWLTCNS DSQFDGESCG LSCHLNCAFD SEKSGLKEDT PSSDIDGCFN
201: CVSCGKTNSK IECLKKQLII ANEERRVGVF CYRILLAHKL LKGTKKYIIV SEEVEKAVMH LKNEFGVPIS CLPSKMSRGL VNRLCCAEKV KKHCSSALKE
301: LDGLPLPSTI QGSMKIRIES VLATSVTFDI EAEESFSWGD TNHYRMVYRK VSEKHSSKDL TRELFSTSSH QRFTVMELTP ATEYWFKIVS FSGVEELSVD
401: EFIVSTKTLQ DEEVAAVLLN MSNCNNANKM EKSGSCSFGF EECVNLIRQL ECSGQVKSDF RKKFLTWYCL KATDKEKHVV EIFVDTFKDD KEALAKQLID
501: TFSDCITRKH PEIGGGSESA GVSLILLQD
Arabidopsis Description
VIL3VIN3-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5BPT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.