CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51654	Canola	cytosol	80.48	93.67
CDY14184	Canola	cytosol	60.8	74.66
CDY28168	Canola	nucleus	73.28	71.56
CDX68633	Canola	nucleus	70.72	71.18
CDY03544	Canola	nucleus	69.28	69.39
AT4G30200.2	Thale cress	nucleus	70.08	61.34
CDY29247	Canola	cytosol, nucleus, plastid	36.8	58.23
CDY59604	Canola	nucleus	36.8	56.79
VIT_11s0052g00830.t01	Wine grape	nucleus	51.2	43.36
KRH02856	Soybean	nucleus	50.56	42.88
KRH19033	Soybean	nucleus	49.92	42.39
Solyc07g018270.2.1	Tomato	cytosol	48.96	41.41
CDY47942	Canola	nucleus	37.28	41.39
CDY42262	Canola	nucleus	36.64	40.67
CDX88618	Canola	mitochondrion	35.68	38.32
CDY11872	Canola	mitochondrion	34.88	38.31
GSMUA_Achr3P05080_001	Banana	cytosol	38.72	37.81
GSMUA_Achr5P16400_001	Banana	cytosol	34.4	37.26
GSMUA_Achr4P02170_001	Banana	cytosol	39.04	37.14
GSMUA_Achr9P13690_001	Banana	plasma membrane	39.2	36.9
CDX77426	Canola	cytosol	17.92	33.04
Os02t0152500-01	Rice	nucleus	37.92	31.64
KXG29488	Sorghum	nucleus	38.08	31.27
Zm00001d053875_P001	Maize	cytosol, plastid	37.92	31.18
TraesCS6A01G123400.1	Wheat	nucleus	37.28	31.07
TraesCS6D01G113600.1	Wheat	nucleus	37.12	30.93
TraesCS6B01G151600.2	Wheat	nucleus	37.12	30.93
PGSC0003DMT400019884	Potato	cytosol	18.24	30.89
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	37.12	30.89
CDX77427	Canola	nucleus	27.84	29.24
Zm00001d015293_P015	Maize	nucleus, plastid	38.24	28.28
HORVU7Hr1G099250.1	Barley	cytosol	36.48	28.15
CDY39555	Canola	nucleus	28.0	27.05
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	35.2	26.83
TraesCS7A01G433000.1	Wheat	cytosol	34.72	26.53

Protein Annotations

MapMan:12.3.3.1.2.2	Gene3D:2.60.40.10	EnsemblPlants:CDX72220	ProteinID:CDX72220	ProteinID:CDX72220.1	InterPro:FN3_dom
InterPro:FN3_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00099676001	InterPro:IPR003961
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Oberon_PHD	PFAM:PF00041	PFAM:PF07227	PFscan:PS50853
PANTHER:PTHR21736	PANTHER:PTHR21736:SF13	SMART:SM00060	SUPFAM:SSF49265	UniParc:UPI0004EE0635	SEG:seg

Description

BnaC07g42420D

Coordinates

chrLK031796:-:37520..40775

Molecular Weight (calculated)

69005.5 Da

IEP (calculated)

7.585

GRAVY (calculated)

-0.440

Length

625 amino acids

Sequence
(BLAST)

001: MDSSGYGAGG DSSKSSGMSV EEKIHLFYEL STQPHLATEV LQAWSRKDIL QILCAEMGKE RKYTGLTKVK LIETLLKTIS KKNSGDHDGN KRGSSDSLPL
101: HRNSKRPRKV DNPTRYVVPT INNNASWSCN NLACRAVMRQ EDSFCRRCSC CICLKYDDNK DPSLWLTCSS DPPFEGESCG FSCHLECAFK SDKSGLAKDK
201: EGEESCCCFY CVSCGKPNSL LECWKKQLTI AKETRRVDVL CYRLLLVQKL IKGSTKFSNV CEVVDEAVKS LEADVGPLSG LPMKMGRGIV NRLGSGPDVQ
301: KLCSSALDSL QPLETKPSYG LSNEVSVDTP TKIRFEDVNA TSLTVILASN DLTSPANIVH YSIWHRKVTE KEYQEKSTCT LFTPNARFVV SGLAPASEYC
401: FKVVSFSGTR EVGVDEINVL TRSSPEEVVE RSESPLTNCS TLSSNPSSVE AESNNVYIAP QNHNKQDSNV EQQEAAVPVT TTTLVSNRNS SDASLPITPF
501: RSDQTKNRQA RNGKSVKENG DHHSANGGSE SGFKHCVSVI RQLESLGHIE KEFRQKFLTW YGLRATPQEI RVVKIFIDTF ADDPVDLAEQ LVHTFNDRVL
601: AKRCSAVGDG ASAVVKSGFC MKLWH

Best Arabidopsis Sequence Match ( AT4G30200.2 )
(BLAST)

001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDC SYVLSNEISA DTATTGSTKI RFEDVNATSL TVVLASNEIP SPPNIVHYSI
401: WHRKVPEKDY PEKSTCTLFI PNTRFVVSGL APASEYCFKV VSYSGTREMG VDEINVLTRS AEEGANCSSA VERSVSPLTN CSTLSSNPSS VEAESNNDYI
501: VPKKPSSKNE DNNSPSVDES AAKRMKRTTD SDIVQIEKDV EQIVLLDDEE QEAVLDKTES ETPVVVTTKS LVGNRNSSDA SLPITPFRSD EIKNRQARIE
601: ISMKDNCNNG DHSANGGTES GLEHCVKIIR QLECSGHIDK NFRQKFLTWY SLRATSQEIR VVKIFIDTFI DDPMALAEQL IDTFDDRVSI KRSAVGGSGA
701: SAVVPSGFCM KLWH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.