Factsheet for HORVU6Hr1G022770.6

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G151600.2	Wheat	nucleus	91.48	91.6
TraesCS6A01G123400.1	Wheat	nucleus	91.34	91.47
TraesCS6D01G113600.1	Wheat	nucleus	91.08	91.2
Os02t0152500-01	Rice	nucleus	67.24	67.42
KXG29488	Sorghum	nucleus	63.25	62.42
Zm00001d053875_P001	Maize	cytosol, plastid	61.25	60.53
Zm00001d015293_P015	Maize	nucleus, plastid	60.32	53.61
GSMUA_Achr4P02170_001	Banana	cytosol	43.81	50.08
GSMUA_Achr3P05080_001	Banana	cytosol	40.75	47.81
GSMUA_Achr5P16400_001	Banana	cytosol	35.69	46.45
GSMUA_Achr9P13690_001	Banana	plasma membrane	39.15	44.28
CDY29247	Canola	cytosol, nucleus, plastid	22.1	42.03
CDY14184	Canola	cytosol	27.83	41.06
CDY59604	Canola	nucleus	21.97	40.74
HORVU7Hr1G099250.1	Barley	cytosol	43.94	40.74
Bra024456.1-P	Field mustard	nucleus	22.77	39.68
CDY51654	Canola	cytosol	28.36	39.66
CDX68633	Canola	nucleus	30.89	37.36
CDX72220	Canola	nucleus	30.89	37.12
CDY03544	Canola	nucleus	30.63	36.86
VIT_11s0052g00830.t01	Wine grape	nucleus	35.82	36.45
Bra011173.1-P	Field mustard	nucleus	31.03	36.41
Bra010297.1-P	Field mustard	nucleus	30.89	36.25
KRH19033	Soybean	nucleus	35.29	36.01
Bra024097.1-P	Field mustard	cytosol	30.63	35.99
KRH02856	Soybean	nucleus	35.29	35.96
CDY28168	Canola	nucleus	30.63	35.94
Solyc07g018270.2.1	Tomato	cytosol	34.35	34.91
Bra006824.1-P	Field mustard	nucleus	21.97	33.81
AT4G30200.2	Thale cress	nucleus	31.96	33.61
AT2G18880.1	Thale cress	nucleus	23.44	33.27
CDY11872	Canola	mitochondrion	24.9	32.86
CDY42262	Canola	nucleus	24.63	32.86
CDX88618	Canola	mitochondrion	25.17	32.47
Bra020445.1-P	Field mustard	nucleus	24.1	32.38
CDY47942	Canola	nucleus	24.1	32.15
AT5G57380.1	Thale cress	nucleus	26.5	32.1
HORVU1Hr1G019570.1	Barley	nucleus	24.5	29.97
PGSC0003DMT400019884	Potato	cytosol	13.98	28.46
HORVU5Hr1G026240.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	16.91	26.46
HORVU7Hr1G096840.1	Barley	plastid	25.97	25.66

Protein Annotations

EnsemblPlants:HORVU6Hr1G022770.6	EnsemblPlantsGene:HORVU6Hr1G022770	Gene3D:2.60.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:FN3_dom	InterPro:FN3_sf	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Oberon_PHD
PANTHER:PTHR21736	PANTHER:PTHR21736:SF24	PFAM:PF07227	PFscan:PS50853	SMART:SM00060	SUPFAM:SSF49265
UniParc:UPI000B4697B3	UniProt:A0A287TLA5	MapMan:12.3.3.1.2.2	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:72970148..72972955

Molecular Weight (calculated)

83354.9 Da

IEP (calculated)

7.767

GRAVY (calculated)

-0.470

Length

751 amino acids

Sequence
(BLAST)

001: FSVSFSPGAI IEPAKCRLMS VEEKRDLVRE LSKRPQSAPD KLQSWSRRDI VDILCADLGR ERKYTGLSKQ RMLDYLFRVV TGKSSGPVVH VQEKEPTLDP
101: NASNHQYPAK RQRKSDNPSR LPIVVNNPLT AVVPVPINNV RSCRNVACRA ILNLEDKFCR RCSCCICFKY DDNKDPTVWL SCSSDHPMQK DSCGLSCHLE
201: CALKDGRTGI LPSGQCKKLD GAYYCPRCRK QRDLLGSWKK QLVFAREARR LDILCYRIFL AHKVLFSTEK YSILHKFVDT AKQKLEAEVG SVAGYGNMGR
301: GIVSRLTCGA EVQKLCADAL DVMKSKFPVE SPTNSQFERS KMMPLSFMKF EPITPTSITV AFDLGRCPYI AQGVTGFKLW HQVEGTGFYL ANPTGIVPVT
401: SKTFVVTELT PGTCYIFKVT AFSNSSEFET WEARVCTSSL KENDLKGLVP GGAGLVDQNN RSPKTNSGGQ SDRSSEGVDS NNNATVYTDL NKSPESDFED
501: CENPEILDSD KVPHHSNGPS NNLQNMQIVA ARLPEVTELE EAPGLSASAL DEEPNSTVEA ALLRESSNSM EQNQRSEVPI SQDASNATTG VELALVPRFV
601: GSMPPTAPRV METGKETGGR SFNTKPSDNI FQNGSSKPER EPGNSSNKRS GKFEDAGHKD GCPEATYEYC VKVVRWLETE GYIETNFRVK FLTWYSLRAT
701: PHDRKIVSVY VNTLIDDPVC LCGQLTDTFS EAIYSKKPPS VPSGFCMNLW H

Best Arabidopsis Sequence Match ( AT5G57380.2 )
(BLAST)

001: MDSSSFEDNE CIETCKPNVL NVSERRELIH ALSNQPEEAS ELLNSWSRNE IMKIICAEMG KERKYTGLNK PKLIENLLNL VSRPLGETSC SDRRNSRKKE
101: KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC AYCGKDNDLL GCWRKQVKVA
201: KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD KVVSPSESVS GQGDKMTVRV
301: EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD ESELRFTTLK DDGDEAGDQQ
401: SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG KQGGNKRFKS RTVSLNEKPE
501: INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL SKRSSTNGVV PAGICLKLWH

Arabidopsis Description

VIN3VIN3 [Source:UniProtKB/TrEMBL;Acc:A0A178UF19]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.