Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14184 | Canola | cytosol | 55.88 | 78.39 |
| CDY51654 | Canola | cytosol | 55.18 | 73.37 |
| CDY28168 | Canola | nucleus | 65.13 | 72.66 |
| Bra011173.1-P | Field mustard | nucleus | 64.43 | 71.88 |
| CDX68633 | Canola | nucleus | 61.48 | 70.69 |
| CDY03544 | Canola | nucleus | 61.34 | 70.19 |
| CDX72220 | Canola | nucleus | 61.34 | 70.08 |
| Bra010297.1-P | Field mustard | nucleus | 62.18 | 69.38 |
| Bra024097.1-P | Field mustard | cytosol | 59.8 | 66.82 |
| VIT_11s0052g00830.t01 | Wine grape | nucleus | 49.44 | 47.83 |
| KRH02856 | Soybean | nucleus | 49.16 | 47.63 |
| KRH19033 | Soybean | nucleus | 48.6 | 47.15 |
| AT2G18880.1 | Thale cress | nucleus | 34.87 | 47.07 |
| Solyc07g018270.2.1 | Tomato | cytosol | 47.76 | 46.14 |
| AT5G57380.1 | Thale cress | nucleus | 36.27 | 41.77 |
| GSMUA_Achr3P05080_001 | Banana | cytosol | 36.41 | 40.62 |
| GSMUA_Achr4P02170_001 | Banana | cytosol | 36.27 | 39.42 |
| GSMUA_Achr9P13690_001 | Banana | plasma membrane | 36.13 | 38.86 |
| GSMUA_Achr5P16400_001 | Banana | cytosol | 31.09 | 38.47 |
| Os02t0152500-01 | Rice | nucleus | 36.13 | 34.45 |
| PGSC0003DMT400019884 | Potato | cytosol | 17.51 | 33.88 |
| TraesCS6B01G151600.2 | Wheat | nucleus | 34.45 | 32.8 |
| Zm00001d053875_P001 | Maize | cytosol, plastid | 34.87 | 32.76 |
| KXG29488 | Sorghum | nucleus | 34.87 | 32.72 |
| TraesCS6A01G123400.1 | Wheat | nucleus | 34.31 | 32.67 |
| TraesCS6D01G113600.1 | Wheat | nucleus | 34.31 | 32.67 |
| HORVU6Hr1G022770.6 | Barley | cytosol, nucleus, plastid | 33.61 | 31.96 |
| HORVU7Hr1G099250.1 | Barley | cytosol | 35.01 | 30.86 |
| Zm00001d015293_P015 | Maize | nucleus, plastid | 35.71 | 30.18 |
| AT2G18870.1 | Thale cress | nucleus, plasma membrane | 9.94 | 29.71 |
| TraesCS7A01G433000.1 | Wheat | cytosol | 33.47 | 29.22 |
| TraesCS7D01G424600.1 | Wheat | cytosol, nucleus, plasma membrane | 33.19 | 28.9 |
| AT3G24440.1 | Thale cress | nucleus | 24.23 | 28.74 |
Protein Annotations
| MapMan:12.3.3.1.2.2 | Gene3D:2.60.40.10 | EntrezGene:829143 | EMBL:AB050977 | ProteinID:AEE85733.1 | ProteinID:AEE85734.1 |
| ProteinID:AEE85735.1 | ProteinID:AEE85736.1 | EMBL:AK316824 | ArrayExpress:AT4G30200 | EnsemblPlantsGene:AT4G30200 | RefSeq:AT4G30200 |
| TAIR:AT4G30200 | RefSeq:AT4G30200-TAIR-G | EnsemblPlants:AT4G30200.2 | TAIR:AT4G30200.2 | Unigene:At.21785 | EMBL:BT002499 |
| EMBL:BT008428 | ProteinID:CAB52464.1 | ProteinID:CAB81013.1 | EMBL:DQ067323 | EMBL:EF064792 | InterPro:FN3_dom |
| InterPro:FN3_sf | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005677 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009506 |
| GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0031519 | GO:GO:0032922 | GO:GO:0035064 | GO:GO:0042802 | GO:GO:0046872 | GO:GO:0048587 |
| GO:GO:1900111 | InterPro:IPR003961 | InterPro:IPR013783 | InterPro:Ig-like_fold | RefSeq:NP_001190871.1 | RefSeq:NP_194749.1 |
| RefSeq:NP_849471.1 | RefSeq:NP_974639.1 | InterPro:Oberon_PHD | PFAM:PF07227 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50853 | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF13 | UniProt:Q9SUM4 |
| SUPFAM:SSF49265 | UniParc:UPI00000A36C4 | Symbol:VEL1 | SEG:seg | : | : |
Description
VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
Coordinates
chr4:-:14786532..14790501
Molecular Weight (calculated)
78774.1 Da
IEP (calculated)
6.117
GRAVY (calculated)
-0.432
Length
714 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDC SYVLSNEISA DTATTGSTKI RFEDVNATSL TVVLASNEIP SPPNIVHYSI
401: WHRKVPEKDY PEKSTCTLFI PNTRFVVSGL APASEYCFKV VSYSGTREMG VDEINVLTRS AEEGANCSSA VERSVSPLTN CSTLSSNPSS VEAESNNDYI
501: VPKKPSSKNE DNNSPSVDES AAKRMKRTTD SDIVQIEKDV EQIVLLDDEE QEAVLDKTES ETPVVVTTKS LVGNRNSSDA SLPITPFRSD EIKNRQARIE
601: ISMKDNCNNG DHSANGGTES GLEHCVKIIR QLECSGHIDK NFRQKFLTWY SLRATSQEIR VVKIFIDTFI DDPMALAEQL IDTFDDRVSI KRSAVGGSGA
701: SAVVPSGFCM KLWH
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDC SYVLSNEISA DTATTGSTKI RFEDVNATSL TVVLASNEIP SPPNIVHYSI
401: WHRKVPEKDY PEKSTCTLFI PNTRFVVSGL APASEYCFKV VSYSGTREMG VDEINVLTRS AEEGANCSSA VERSVSPLTN CSTLSSNPSS VEAESNNDYI
501: VPKKPSSKNE DNNSPSVDES AAKRMKRTTD SDIVQIEKDV EQIVLLDDEE QEAVLDKTES ETPVVVTTKS LVGNRNSSDA SLPITPFRSD EIKNRQARIE
601: ISMKDNCNNG DHSANGGTES GLEHCVKIIR QLECSGHIDK NFRQKFLTWY SLRATSQEIR VVKIFIDTFI DDPMALAEQL IDTFDDRVSI KRSAVGGSGA
701: SAVVPSGFCM KLWH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.