CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015293_P015	Maize	nucleus, plastid	84.23	75.86
Os02t0152500-01	Rice	nucleus	73.46	74.63
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	62.42	63.25
TraesCS6D01G113600.1	Wheat	nucleus	62.29	63.2
TraesCS6B01G151600.2	Wheat	nucleus	62.16	63.07
TraesCS6A01G123400.1	Wheat	nucleus	61.89	62.8
GSMUA_Achr3P05080_001	Banana	cytosol	42.31	50.31
GSMUA_Achr4P02170_001	Banana	cytosol	43.23	50.08
GSMUA_Achr5P16400_001	Banana	cytosol	35.87	47.31
GSMUA_Achr9P13690_001	Banana	plasma membrane	39.95	45.78
CDY29247	Canola	cytosol, nucleus, plastid	22.21	42.78
CDY14184	Canola	cytosol	28.38	42.44
CDY59604	Canola	nucleus	22.34	41.98
Bra024456.1-P	Field mustard	nucleus	23.13	40.84
CDY51654	Canola	cytosol	28.78	40.78
CDX68633	Canola	nucleus	32.19	39.45
Bra011173.1-P	Field mustard	nucleus	32.98	39.22
CDY28168	Canola	nucleus	32.59	38.75
VIT_11s0052g00830.t01	Wine grape	nucleus	37.19	38.35
CDX72220	Canola	nucleus	31.27	38.08
CDY03544	Canola	nucleus	31.14	37.98
Bra010297.1-P	Field mustard	nucleus	31.41	37.34
KRH02856	Soybean	nucleus	35.74	36.91
Bra006824.1-P	Field mustard	nucleus	23.65	36.89
KRH19033	Soybean	nucleus	35.35	36.55
Bra024097.1-P	Field mustard	cytosol	30.35	36.15
Solyc07g018270.2.1	Tomato	cytosol	35.09	36.13
CDY42262	Canola	nucleus	26.28	35.52
AT5G57380.1	Thale cress	nucleus	28.91	35.48
Bra020445.1-P	Field mustard	nucleus	26.02	35.42
OQU80080	Sorghum	cytosol	29.17	34.91
AT4G30200.2	Thale cress	nucleus	32.72	34.87
CDY47942	Canola	nucleus	25.76	34.81
CDY11872	Canola	mitochondrion	25.89	34.62
CDX88618	Canola	mitochondrion	26.41	34.54
AT2G18880.1	Thale cress	nucleus	23.39	33.65
KXG21293	Sorghum	cytosol	26.02	33.17
EES17116	Sorghum	nucleus	28.52	31.09
PGSC0003DMT400019884	Potato	cytosol	14.06	29.0

Protein Annotations

EnsemblPlants:KXG29488	EnsemblPlantsGene:SORBI_3004G042900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:FN3_dom
InterPro:FN3_sf	InterPro:IPR003961	InterPro:Oberon_PHD	PANTHER:PTHR21736	PANTHER:PTHR21736:SF24	PFAM:PF07227
ProteinID:KXG29488	ProteinID:KXG29488.1	SEG:seg	SUPFAM:SSF49265	UniParc:UPI0007F2052B	UniProt:A0A194YMN1
MapMan:12.3.3.1.2.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:3536463..3543184

Molecular Weight (calculated)

84561.1 Da

IEP (calculated)

7.101

GRAVY (calculated)

-0.545

Length

761 amino acids

Sequence
(BLAST)

001: MDPPRGGTVI DPAKCRLMSV DEKRELVRDL SKSPESAPDR LVAWTRREIV EILCSDLGRE RKYTGLSKQR MLDYLFRVVS GKSSGPVEHV QEKEKGKEKG
101: KEKEKEKESI PEPNTTNHQS PAKRPRKSEN PSRLPIITNN SAASDVTGPP NNPRFCQNVA CRAILRDKFC RRCSCCICFN YDDNKDPSLW LSCSSDQHLQ
201: KDTCGFSCHL ECALKDERTG ILQSGQCKKL DGGYYCTRCW KQNDLLGSWK KQLVTAKDAR RLDVLCHRIY LSHKILISTE KYLVLHEIVD TALKKLEAEV
301: GPISGAPNMS RGIVSRLTVG AEVQKLCAQA IDAMESLFSD VSPASSRIQR PSMIPPNFVK FEAITPTSVV VFLDLVHCPM LAQEATSFNI WHRVAVTESY
401: LSNPSGIILA PSKKLPVTGL APATSYIFKV IAFKNSIELG SWEIRTKTSC QKDDPRGSMP GGTGLGQNSE SPKANSDGQS DPSSEGVDSN NNTAVYADLN
501: KSPESDFEYC ENPEILDSDK ASHHPSERID DLQNIQIAAD RITEVTELEE APGLSASALD EEPNACVQTL LLRESNSLEH NQRAVVPRSQ DTSNVLAGNE
601: LMIVGPRYAG SVPPIATRGV ENCKENGGRG FKPKPCDNVV HNGSSKPERE PGNSSNKRTS GKMEDLGHKD NSSEVSYEYC VKVVRWLECE GYIETNFRVK
701: FLTWFSLRAT LQERKIVSVY VDTLIDDPVS LSGQLVDSFS ERIYSKKRPS MPSGFCMDLW H

Best Arabidopsis Sequence Match ( AT4G30200.3 )
(BLAST)

001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDT ATTGSTKIRF EDVNATSLTV VLASNEIPSP PNIVHYSIWH RKVPEKDYPE
401: KSTCTLFIPN TRFVVSGLAP ASEYCFKVVS YSGTREMGVD EINVLTRSAE EGANCSSAVE RSVSPLTNCS TLSSNPSSVE AESNNDYIVP KKPSSKNEDN
501: NSPSVDESAA KRMKRTTDSD IVQIEKDVEQ IVLLDDEEQE AVLDKTESET PVVVTTKSLV GNRNSSDASL PITPFRSDEI KNRQARIEIS MKDNCNNGDH
601: SANGGTESGL EHCVKIIRQL ECSGHIDKNF RQKFLTWYSL RATSQEIRVV KIFIDTFIDD PMALAEQLID TFDDRVSIKR SAVGGSGASA VVPSGFCMKL
701: WH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.