Factsheet for Bra006824.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88618	Canola	mitochondrion	92.21	77.32
Bra020445.1-P	Field mustard	nucleus	68.44	59.75
AT5G57380.1	Thale cress	nucleus	68.24	53.71
Bra024456.1-P	Field mustard	nucleus	32.58	36.89
Bra010297.1-P	Field mustard	nucleus	41.19	31.41
VIT_11s0052g00830.t01	Wine grape	nucleus	46.72	30.89
Bra011173.1-P	Field mustard	nucleus	39.96	30.47
Bra024097.1-P	Field mustard	cytosol	39.75	30.36
KRH02856	Soybean	nucleus	45.49	30.12
Bra015040.1-P	Field mustard	cytosol	20.7	29.79
KRH19033	Soybean	nucleus	44.88	29.76
GSMUA_Achr5P16400_001	Banana	cytosol	34.84	29.46
Solyc07g018270.2.1	Tomato	cytosol	43.44	28.69
GSMUA_Achr4P02170_001	Banana	cytosol	37.5	27.85
GSMUA_Achr3P05080_001	Banana	cytosol	36.48	27.81
GSMUA_Achr9P13690_001	Banana	plasma membrane	35.66	26.2
Bra015039.1-P	Field mustard	nucleus	29.51	24.2
KXG29488	Sorghum	nucleus	36.89	23.65
Zm00001d053875_P001	Maize	cytosol, plastid	36.68	23.55
Os02t0152500-01	Rice	nucleus	36.07	23.5
PGSC0003DMT400019884	Potato	cytosol	17.21	22.76
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	33.81	21.97
TraesCS6B01G151600.2	Wheat	nucleus	33.61	21.87
TraesCS6A01G123400.1	Wheat	nucleus	33.4	21.73
TraesCS6D01G113600.1	Wheat	nucleus	33.4	21.73
Zm00001d015293_P015	Maize	nucleus, plastid	37.09	21.42
TraesCS7A01G433000.1	Wheat	cytosol	35.45	21.15
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	35.25	20.98
HORVU7Hr1G099250.1	Barley	cytosol	34.22	20.62

Protein Annotations

EnsemblPlants:Bra006824.1	EnsemblPlants:Bra006824.1-P	EnsemblPlantsGene:Bra006824	InterPro:Oberon_PHD	PANTHER:PTHR21736	PANTHER:PTHR21736:SF13
PFAM:PF07227	SEG:seg	UniParc:UPI000253FCAA	UniProt:M4CRI3	MapMan:12.3.3.1.2.2	:

Description

AT5G57380 (E=1e-123) VIN3 | VIN3 (VERNALIZATION INSENSITIVE 3); protein binding / zinc ion binding

Coordinates

chrA03:+:5210338..5211944

Molecular Weight (calculated)

54490.5 Da

IEP (calculated)

7.867

GRAVY (calculated)

-0.635

Length

488 amino acids

Sequence
(BLAST)

001: MGKERKYTGL NKPKLIENLL NLVSRPLGET SCLDRKSSRR KRQKTTTSYI ICCENLACRA ALGSEDTFCR RCSCCVCQNF DDNKDPSLWI ACEGCGLSCH
101: LECAFKEDGY GIGCNDDVRG LDGRFHCVFC GKDNDLLGCW RKQVKVAKET RRVDVLCYRV SLGQKMLRGT RRYQNLLELM DEAVKKLEGD VGPLVSWEMK
201: MAGGIGNRFD SGSQVQKLCS LAMEALDKMV SPPSESVSGQ GDKMSVRVEE IQARSVNVRL DSEEPSSSSQ NRITGVKDDG EEAGNRQRHL TNSSSGLCSS
301: NPSLAEDESN HVSKNCCKEN SDNNNAEHCS AGEVESEIEE ERVLKRKVNE IEGRDLFVIT PCKRDTFNGN QGGNKRFKSR TSTKKPETNV AENGVGGDKD
401: LGRVVKTIRC LEQEGHIDKS FRERFLSWYS LRATHREVKV VKVFVETFKD DLSSLGQQLV DTFSECIQSK RSSTTGVVPA GICLKFWH

Best Arabidopsis Sequence Match ( AT5G57380.2 )
(BLAST)

001: MDSSSFEDNE CIETCKPNVL NVSERRELIH ALSNQPEEAS ELLNSWSRNE IMKIICAEMG KERKYTGLNK PKLIENLLNL VSRPLGETSC SDRRNSRKKE
101: KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC AYCGKDNDLL GCWRKQVKVA
201: KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD KVVSPSESVS GQGDKMTVRV
301: EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD ESELRFTTLK DDGDEAGDQQ
401: SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG KQGGNKRFKS RTVSLNEKPE
501: INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL SKRSSTNGVV PAGICLKLWH

Arabidopsis Description

VIN3VIN3 [Source:UniProtKB/TrEMBL;Acc:A0A178UF19]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.