Factsheet for TraesCS7D01G424600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G433000.1	Wheat	cytosol	73.54	73.72
HORVU7Hr1G099250.1	Barley	cytosol	70.85	71.73
CDY29247	Canola	cytosol, nucleus, plastid	22.2	46.08
CDY59604	Canola	nucleus	22.2	44.94
TraesCS6D01G113600.1	Wheat	nucleus	40.12	43.87
GSMUA_Achr5P16400_001	Banana	cytosol	30.85	43.85
GSMUA_Achr3P05080_001	Banana	cytosol	34.02	43.59
GSMUA_Achr4P02170_001	Banana	cytosol	34.76	43.38
Bra024456.1-P	Field mustard	nucleus	22.56	42.92
CDY14184	Canola	cytosol	25.49	41.06
GSMUA_Achr9P13690_001	Banana	plasma membrane	32.07	39.61
CDY51654	Canola	cytosol	25.85	39.48
CDY03544	Canola	nucleus	27.2	35.74
Bra011173.1-P	Field mustard	nucleus	27.8	35.62
CDX68633	Canola	nucleus	26.83	35.43
CDY28168	Canola	nucleus	27.56	35.31
Bra006824.1-P	Field mustard	nucleus	20.98	35.25
CDX72220	Canola	nucleus	26.83	35.2
AT2G18880.1	Thale cress	nucleus	22.68	35.16
Bra010297.1-P	Field mustard	nucleus	27.44	35.16
AT5G57380.1	Thale cress	nucleus	26.46	35.0
KRH02856	Soybean	nucleus	31.34	34.87
KRH19033	Soybean	nucleus	31.1	34.65
VIT_11s0052g00830.t01	Wine grape	nucleus	30.98	34.42
Bra024097.1-P	Field mustard	cytosol	26.71	34.27
CDY11872	Canola	mitochondrion	23.66	34.09
Bra020445.1-P	Field mustard	nucleus	23.05	33.81
CDY42262	Canola	nucleus	23.05	33.57
CDY47942	Canola	nucleus	23.05	33.57
AT4G30200.2	Thale cress	nucleus	28.9	33.19
CDX88618	Canola	mitochondrion	23.54	33.16
Solyc07g018270.2.1	Tomato	cytosol	29.51	32.75
TraesCS5D01G109600.1	Wheat	nucleus	24.51	28.84
TraesCS1D01G090400.1	Wheat	cytosol	21.59	28.78
PGSC0003DMT400019884	Potato	cytosol	11.1	24.66

Protein Annotations

EnsemblPlants:TraesCS7D01G424600.1	EnsemblPlantsGene:TraesCS7D01G424600	Gene3D:2.60.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:FN3_dom	InterPro:FN3_sf	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Oberon_PHD
PANTHER:PTHR21736	PANTHER:PTHR21736:SF24	PFAM:PF07227	PFscan:PS50853	SEG:seg	SUPFAM:SSF49265
TIGR:cd15521	MapMan:12.3.3.1.2.2	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:545226306..545231010

Molecular Weight (calculated)

88956.8 Da

IEP (calculated)

6.538

GRAVY (calculated)

-0.517

Length

820 amino acids

Sequence
(BLAST)

001: MASSLYSGCI ADPDRCRLLS VDAKRELVLQ LSKCPHIALG LLHEWTSHDI KQILFSVLCR ENKYEGVSKK IMLKYLFQAV NGEPSGRGKR VSKSDPEQNS
101: STLQFSHKKL RKNDATLLPV IVSTPVTAGV SAPTNSACQN SACRASLNPA DKFCRRCSCC ICFKYDDNKD PSLWLSCNSD QPLQGESCGL SCHLECALGD
201: ERSGILQSGQ SKKLDGSYYC IHCGKQNDLL GCWKKQLLIA KDARRSDVLC HRISLSHKLL VSTKKYLVLH EFVDTALKKL EGELGPITGL EDKGRGIVGR
301: LVVGAEVQKL CSCAIETLES MLSGALTAES QTQSSCVVPS NFIRLEDISH ESVTVVFDLH VCPMLSQGLT GFNLWHRKAS EEHYPSNPTG IVPTPSTMLV
401: VRGLAPCTSY VIKVVAFTNS KEIGSWEVRT NTTNCPKEPD AKDSMPVDAG KDLNNTSAKT NSSGLSNPSS QDVESYNDSS TSADLSRSPE SDVEYWTSLG
501: KAPHRRNETD SDSRDLKTGV AGVTKADELE EAPRGSPSAL DDDDDDEEEP GSAAEAALPK RPSELMVCSR EALKQNLATI CSEIASQEHT GSESVAPPEH
601: RGSPPRVTQE GTENRKGVSA RCVQAKSDDH IPQDDSSKAE MEDPGSLSCK GTPGKPENSG HNDGGPSAPH TSAQAPPLRK PSNLPQRHKQ GIDIVPENAP
701: GSPVPMTGNG SKPKNDGRVP QPCPLKPGPE PGKPEDAART DADAYVYCVK VIRWLECEGY VEASFRVKFL TWLSLRATRH EKRVVSVFVD AFIDDPASLA
801: GQLRDTFSEA IYSKRPPMAP

Best Arabidopsis Sequence Match ( AT4G30200.3 )
(BLAST)

001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDT ATTGSTKIRF EDVNATSLTV VLASNEIPSP PNIVHYSIWH RKVPEKDYPE
401: KSTCTLFIPN TRFVVSGLAP ASEYCFKVVS YSGTREMGVD EINVLTRSAE EGANCSSAVE RSVSPLTNCS TLSSNPSSVE AESNNDYIVP KKPSSKNEDN
501: NSPSVDESAA KRMKRTTDSD IVQIEKDVEQ IVLLDDEEQE AVLDKTESET PVVVTTKSLV GNRNSSDASL PITPFRSDEI KNRQARIEIS MKDNCNNGDH
601: SANGGTESGL EHCVKIIRQL ECSGHIDKNF RQKFLTWYSL RATSQEIRVV KIFIDTFIDD PMALAEQLID TFDDRVSIKR SAVGGSGASA VVPSGFCMKL
701: WH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.