Factsheet for VIT_11s0052g00830.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02856	Soybean	nucleus	63.55	63.64
KRH19033	Soybean	nucleus	62.74	62.91
Solyc07g018270.2.1	Tomato	cytosol	60.98	60.89
CDY14184	Canola	cytosol	39.84	57.76
PGSC0003DMT400019884	Potato	cytosol	27.64	55.28
CDY51654	Canola	cytosol	40.11	55.12
CDY29247	Canola	cytosol, nucleus, plastid	29.4	54.94
CDY59604	Canola	nucleus	29.0	52.84
Bra024456.1-P	Field mustard	nucleus	30.49	52.2
CDY03544	Canola	nucleus	43.63	51.6
CDY28168	Canola	nucleus	44.44	51.25
CDX72220	Canola	nucleus	43.36	51.2
CDX68633	Canola	nucleus	42.82	50.89
VIT_18s0001g07650.t01	Wine grape	cytosol	37.67	50.82
Bra011173.1-P	Field mustard	nucleus	43.9	50.62
Bra010297.1-P	Field mustard	nucleus	43.63	50.31
AT4G30200.2	Thale cress	nucleus	47.83	49.44
Bra024097.1-P	Field mustard	cytosol	42.55	49.14
Bra006824.1-P	Field mustard	nucleus	30.89	46.72
GSMUA_Achr3P05080_001	Banana	cytosol	40.24	46.41
GSMUA_Achr9P13690_001	Banana	plasma membrane	41.33	45.93
GSMUA_Achr4P02170_001	Banana	cytosol	40.51	45.51
AT5G57380.1	Thale cress	nucleus	38.08	45.32
Bra020445.1-P	Field mustard	nucleus	34.15	45.08
CDY47942	Canola	nucleus	34.28	44.94
GSMUA_Achr5P16400_001	Banana	cytosol	35.09	44.89
CDY42262	Canola	nucleus	33.88	44.41
CDY11872	Canola	mitochondrion	33.88	43.94
CDX88618	Canola	mitochondrion	34.28	43.47
AT2G18880.1	Thale cress	nucleus	29.67	41.4
Os02t0152500-01	Rice	nucleus	39.16	38.58
KXG29488	Sorghum	nucleus	38.35	37.19
Zm00001d053875_P001	Maize	cytosol, plastid	37.94	36.84
TraesCS6A01G123400.1	Wheat	nucleus	37.13	36.53
TraesCS6B01G151600.2	Wheat	nucleus	36.99	36.4
TraesCS6D01G113600.1	Wheat	nucleus	36.86	36.27
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	36.45	35.82
Zm00001d015293_P015	Maize	nucleus, plastid	38.89	33.96
VIT_11s0016g04240.t01	Wine grape	nucleus	31.57	32.32
HORVU7Hr1G099250.1	Barley	cytosol	35.23	32.1
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	34.42	30.98
TraesCS7A01G433000.1	Wheat	cytosol	33.88	30.56
VIT_04s0008g04380.t01	Wine grape	cytosol	30.22	26.14

Protein Annotations

EntrezGene:100251391	wikigene:100251391	MapMan:12.3.3.1.2.2	Gene3D:2.60.40.10	ProteinID:CCB44658	ProteinID:CCB44658.1
ncoils:Coil	UniProt:F6GXH2	InterPro:FN3_dom	InterPro:FN3_sf	EMBL:FN594964	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	EntrezGene:LOC100251391
wikigene:LOC100251391	InterPro:Oberon_PHD	PFAM:PF07227	PFscan:PS50853	PANTHER:PTHR21736	PANTHER:PTHR21736:SF13
SUPFAM:SSF49265	TIGR:TC56829	UniParc:UPI0001984394	ArrayExpress:VIT_11s0052g00830	EnsemblPlantsGene:VIT_11s0052g00830	EnsemblPlants:VIT_11s0052g00830.t01
unigene:Vvi.7173	RefSeq:XP_002270335	RefSeq:XP_002270335.1	RefSeq:XP_010656842.1	RefSeq:XP_010656843.1	SEG:seg

Description

No Description!

Coordinates

chr11:-:18377353..18384742

Molecular Weight (calculated)

82072.7 Da

IEP (calculated)

5.841

GRAVY (calculated)

-0.575

Length

738 amino acids

Sequence
(BLAST)

001: MDSSSEGIVY DPSKINKLSM EEKRELVYAV SKWSRGGPEM LQSWSRQEIL QILCAEMGKE RKYTGLTKLK IIEHLLRVVS EKNSVEQEVV TNHEINHESQ
101: PSAATNQRTS KRQRKADHPS RLPVAANNHS ISNGDGDLGN AIYCKNLACR ANLSREYEFC KRCSCCICHQ YDDNKDPSLW LTCSSDPPFQ GVSCGMSCHL
201: ECAFKHEKSG IAKDGRHVRL DGSFYCVSCG KVNDMLGCWR KQLMMAKETR RVDILCYRVS LSQKLLNGTK KYQKLYEIVE EAVKKLEAEV GPLTGLPVKT
301: ARGIVNRLSS GPEVQRLCAL ALESLDSVLS NSHPRPAPGP KIQDAGLVAP SIRFEDVCST SLTVILGSED SSTDNVISYK LWHRKSNDLE YPAEPACTML
401: APNKRFTFSD LTPSTEYVFK VVSFQDTREL GMGEVQFSTS SSGDDIPKSL VAERSQSPAT NCSSLSNPSS VEDETNNVTP YHDQNENRED NYPGYCKGTD
501: KTVSTNLSNE ATNCTGTDQE GNPADSVFVS DDERDLRVVV SMPKVLKPDN KTSLECQIIE EMSTDKEANT PVRTGMECVP FVGSSEAGLP ITPCKLEIFK
601: DGLGRNGRPK PSTMDLDDGS GKGDEPQAGS SSKKRSAERQ DEECAANGPS DRDFEYYVKV IRWLECEGHV EKNFRQKFLT WYSLRATPQE VRIVKVFVDT
701: LIEDPASLAE QLIDTFSETI SSKRSSVVPA GFCMKLWH

Best Arabidopsis Sequence Match ( AT4G30200.3 )
(BLAST)

001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDT ATTGSTKIRF EDVNATSLTV VLASNEIPSP PNIVHYSIWH RKVPEKDYPE
401: KSTCTLFIPN TRFVVSGLAP ASEYCFKVVS YSGTREMGVD EINVLTRSAE EGANCSSAVE RSVSPLTNCS TLSSNPSSVE AESNNDYIVP KKPSSKNEDN
501: NSPSVDESAA KRMKRTTDSD IVQIEKDVEQ IVLLDDEEQE AVLDKTESET PVVVTTKSLV GNRNSSDASL PITPFRSDEI KNRQARIEIS MKDNCNNGDH
601: SANGGTESGL EHCVKIIRQL ECSGHIDKNF RQKFLTWYSL RATSQEIRVV KIFIDTFIDD PMALAEQLID TFDDRVSIKR SAVGGSGASA VVPSGFCMKL
701: WH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.