CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020445.1-P	Field mustard	nucleus	96.27	96.96
CDY42262	Canola	nucleus	90.23	90.23
CDY11872	Canola	mitochondrion	68.38	67.66
CDX88618	Canola	mitochondrion	66.79	64.6
AT5G57380.1	Thale cress	nucleus	67.67	61.45
CDY29247	Canola	cytosol, nucleus, plastid	31.44	44.81
CDY59604	Canola	nucleus	31.44	43.7
CDY14184	Canola	cytosol	38.19	42.24
CDY51654	Canola	cytosol	38.72	40.6
CDY03544	Canola	nucleus	41.56	37.5
CDX72220	Canola	nucleus	41.39	37.28
CDX68633	Canola	nucleus	40.85	37.04
CDY28168	Canola	nucleus	41.92	36.88
VIT_11s0052g00830.t01	Wine grape	nucleus	44.94	34.28
KRH02856	Soybean	nucleus	44.58	34.06
KRH19033	Soybean	nucleus	44.41	33.97
Solyc07g018270.2.1	Tomato	cytosol	42.1	32.07
GSMUA_Achr4P02170_001	Banana	cytosol	36.23	31.05
GSMUA_Achr3P05080_001	Banana	cytosol	34.81	30.62
GSMUA_Achr9P13690_001	Banana	plasma membrane	34.99	29.67
GSMUA_Achr5P16400_001	Banana	cytosol	29.84	29.12
Os02t0152500-01	Rice	nucleus	34.99	26.3
CDX77426	Canola	cytosol	15.81	26.25
KXG29488	Sorghum	nucleus	34.81	25.76
Zm00001d053875_P001	Maize	cytosol, plastid	34.46	25.53
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	32.15	24.1
CDX77427	Canola	nucleus	25.4	24.03
TraesCS6A01G123400.1	Wheat	nucleus	31.62	23.73
TraesCS6B01G151600.2	Wheat	nucleus	31.62	23.73
TraesCS6D01G113600.1	Wheat	nucleus	31.62	23.73
HORVU7Hr1G099250.1	Barley	cytosol	33.21	23.09
Zm00001d015293_P015	Maize	nucleus, plastid	34.64	23.08
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	33.57	23.05
TraesCS7A01G433000.1	Wheat	cytosol	32.68	22.49
CDY39555	Canola	nucleus	25.04	21.79
PGSC0003DMT400019884	Potato	cytosol	13.68	20.87

Protein Annotations

EnsemblPlants:CDY47942	EnsemblPlantsGene:GSBRNA2T00088555001	InterPro:Oberon_PHD	PANTHER:PTHR21736	PANTHER:PTHR21736:SF13	PFAM:PF07227
ProteinID:CDY47942	ProteinID:CDY47942.1	SEG:seg	UniParc:UPI0004EDBEC8	UniProt:A0A078ICV7	MapMan:12.3.3.1.2.2

Description

BnaA02g08140DBnaA02g08140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICV7]

Coordinates

chrLK032745:-:113169..115680

Molecular Weight (calculated)

63027.2 Da

IEP (calculated)

6.331

GRAVY (calculated)

-0.496

Length

563 amino acids

Sequence
(BLAST)

001: MLLLEVFHSL SKNWRFDSTV GPEDIDPSSF QGVTCADFPK KKGLSVSERR ELIHALSKQP EEASELLNSW SRDEIMKIIC AEMGKERKYT GLAKPKLIET
101: LLKLVSRPLG ETSRPDRKNS KKKRKTTSYI ICCENVACRA ALGTEDTFCR KCSCCVCQNY DEDKDPSLWI TCEACGLSCH LECALEQERY GIGCDDDEVG
201: RALDGRFYCV FCGKDNDLLG CWRQQVKVAK ETQRVDVLCY RVSLGQKLLR GTRKYRYLLE LMDEAVKKLE GDVGPLSGCA MKMARGIVQS LSSGTQVQKL
301: CSLAMEALDK MVSPPSESVS GQGDKLSVRV EEVQARSVTV ILDSEEPSSS QNQTTGVEGD EDEAGNMQSL LINSSSGLCS NPSLPEDEFN NALIRCCKEN
401: GDNDNIEVES ELEDERLIKR KVNEPEGREL LVVTPCRRDA YKGKQEGNKR SKSRTATVNE KPETNVANGF GGDNDLVHVV KTIRCLEQEG HIDKSFRKRF
501: LTWYSLRATH REVRVVKLFI ETFMDDLPSL GQQLMHTFSD CTLNKRSSAS GVVPAGICLK LWH

Best Arabidopsis Sequence Match ( AT5G57380.1 )
(BLAST)

001: MQAASLSKIW RFDGNVGPEN MDSSSFEDNE CIETCKPNVL NVSERRELIH ALSNQPEEAS ELLNSWSRNE IMKIICAEMG KERKYTGLNK PKLIENLLNL
101: VSRPLGETSC SDRRNSRKKE KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC
201: AYCGKDNDLL GCWRKQVKVA KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD
301: KVVSPSESVS GQGDKMTVRV EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD
401: ESELRFTTLK DDGDEAGDQQ SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG
501: KQGGNKRFKS RTVSLNEKPE INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL
601: SKRSSTNGVV PAGICLKLWH

Arabidopsis Description

VIN3VIN3 [Source:UniProtKB/TrEMBL;Acc:A0A178UF19]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.