Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47942 | Canola | nucleus | 90.23 | 90.23 |
| CDY11872 | Canola | mitochondrion | 71.4 | 70.65 |
| CDX88618 | Canola | mitochondrion | 69.09 | 66.84 |
| AT5G57380.1 | Thale cress | nucleus | 65.9 | 59.84 |
| CDY29247 | Canola | cytosol, nucleus, plastid | 31.08 | 44.3 |
| CDY59604 | Canola | nucleus | 31.08 | 43.21 |
| CDY14184 | Canola | cytosol | 37.3 | 41.26 |
| CDY51654 | Canola | cytosol | 37.83 | 39.66 |
| CDY03544 | Canola | nucleus | 41.03 | 37.02 |
| CDX72220 | Canola | nucleus | 40.67 | 36.64 |
| CDX68633 | Canola | nucleus | 40.32 | 36.55 |
| CDY28168 | Canola | nucleus | 41.21 | 36.25 |
| VIT_11s0052g00830.t01 | Wine grape | nucleus | 44.41 | 33.88 |
| KRH02856 | Soybean | nucleus | 44.23 | 33.79 |
| KRH19033 | Soybean | nucleus | 44.05 | 33.7 |
| GSMUA_Achr4P02170_001 | Banana | cytosol | 37.3 | 31.96 |
| Solyc07g018270.2.1 | Tomato | cytosol | 41.74 | 31.8 |
| GSMUA_Achr3P05080_001 | Banana | cytosol | 35.17 | 30.94 |
| GSMUA_Achr9P13690_001 | Banana | plasma membrane | 35.52 | 30.12 |
| GSMUA_Achr5P16400_001 | Banana | cytosol | 30.2 | 29.46 |
| CDX77426 | Canola | cytosol | 16.16 | 26.84 |
| Os02t0152500-01 | Rice | nucleus | 35.52 | 26.7 |
| KXG29488 | Sorghum | nucleus | 35.52 | 26.28 |
| Zm00001d053875_P001 | Maize | cytosol, plastid | 35.17 | 26.05 |
| HORVU6Hr1G022770.6 | Barley | cytosol, nucleus, plastid | 32.86 | 24.63 |
| TraesCS6B01G151600.2 | Wheat | nucleus | 32.33 | 24.27 |
| TraesCS6A01G123400.1 | Wheat | nucleus | 31.97 | 24.0 |
| TraesCS6D01G113600.1 | Wheat | nucleus | 31.97 | 24.0 |
| CDX77427 | Canola | nucleus | 25.04 | 23.7 |
| Zm00001d015293_P015 | Maize | nucleus, plastid | 35.35 | 23.55 |
| HORVU7Hr1G099250.1 | Barley | cytosol | 33.21 | 23.09 |
| TraesCS7D01G424600.1 | Wheat | cytosol, nucleus, plasma membrane | 33.57 | 23.05 |
| TraesCS7A01G433000.1 | Wheat | cytosol | 33.04 | 22.74 |
| CDY39555 | Canola | nucleus | 24.69 | 21.48 |
| PGSC0003DMT400019884 | Potato | cytosol | 13.85 | 21.14 |
Protein Annotations
| EnsemblPlants:CDY42262 | EnsemblPlantsGene:GSBRNA2T00074497001 | InterPro:Oberon_PHD | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF13 | PFAM:PF07227 |
| ProteinID:CDY42262 | ProteinID:CDY42262.1 | SEG:seg | UniParc:UPI0004EF01B8 | UniProt:A0A078HWS0 | MapMan:12.3.3.1.2.2 |
Description
BnaC02g11530DBnaC02g11530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWS0]
Coordinates
chrLK032519:-:240850..243323
Molecular Weight (calculated)
62997.1 Da
IEP (calculated)
5.412
GRAVY (calculated)
-0.478
Length
563 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLLEVFNSL SKNWRFDSTV GPEDIDPSSF QGVTCTDFPK KKGLSVSERR ELIHALSKQP EEASELLNSW SRDEIMKIIC AEMGKERKYT GLAKPKLIET
101: LLKLVSRPLG ETSRPDRKNS KKKRKTTSYI ICCENVACRA ALGTEDTLCR KCSCCVCQNY DEDKDPSLWI TCEACGLSCH LECALEQKRY GIGCDDDEVG
201: RALDGRFYCV FCGKDNDLLG CWREQVKVAK ETQRVDVLCY RVSLGQKLLR GTGKYRYLLE LMDEAVKKLE GDVGPLSGWA MNMARGIVQR LSSGSQVQKL
301: CSLAMEALDK MVSPPSESVS GQGDKLSVGV EEIQARSVTV ILDSEEPSSS QNQTTGVKDD EDEAGNIQSL LINSSSGLCS NPSLPEDEFN NVLISCCKEN
401: GDNDNIEVES ELEDERLITR EVNEPEGRDL LVVTPCRRDA YKGKQEGNKR SKSRTATVNE KPETNVANGV GEDEDLVHVV KTIRCLEKEG HIDKSFRKRF
501: LTWYSLRATH REVRVVKLFI ETFMDDLPSL GQQLVHTFTE CMFNKRSSAS GVVPAGICLK LWH
101: LLKLVSRPLG ETSRPDRKNS KKKRKTTSYI ICCENVACRA ALGTEDTLCR KCSCCVCQNY DEDKDPSLWI TCEACGLSCH LECALEQKRY GIGCDDDEVG
201: RALDGRFYCV FCGKDNDLLG CWREQVKVAK ETQRVDVLCY RVSLGQKLLR GTGKYRYLLE LMDEAVKKLE GDVGPLSGWA MNMARGIVQR LSSGSQVQKL
301: CSLAMEALDK MVSPPSESVS GQGDKLSVGV EEIQARSVTV ILDSEEPSSS QNQTTGVKDD EDEAGNIQSL LINSSSGLCS NPSLPEDEFN NVLISCCKEN
401: GDNDNIEVES ELEDERLITR EVNEPEGRDL LVVTPCRRDA YKGKQEGNKR SKSRTATVNE KPETNVANGV GEDEDLVHVV KTIRCLEKEG HIDKSFRKRF
501: LTWYSLRATH REVRVVKLFI ETFMDDLPSL GQQLVHTFTE CMFNKRSSAS GVVPAGICLK LWH
001: MDSSSFEDNE CIETCKPNVL NVSERRELIH ALSNQPEEAS ELLNSWSRNE IMKIICAEMG KERKYTGLNK PKLIENLLNL VSRPLGETSC SDRRNSRKKE
101: KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC AYCGKDNDLL GCWRKQVKVA
201: KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD KVVSPSESVS GQGDKMTVRV
301: EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD ESELRFTTLK DDGDEAGDQQ
401: SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG KQGGNKRFKS RTVSLNEKPE
501: INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL SKRSSTNGVV PAGICLKLWH
101: KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC AYCGKDNDLL GCWRKQVKVA
201: KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD KVVSPSESVS GQGDKMTVRV
301: EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD ESELRFTTLK DDGDEAGDQQ
401: SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG KQGGNKRFKS RTVSLNEKPE
501: INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL SKRSSTNGVV PAGICLKLWH
Arabidopsis Description
VIN3VIN3 [Source:UniProtKB/TrEMBL;Acc:A0A178UF19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.