CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011173.1-P	Field mustard	nucleus	94.69	94.69
CDX68633	Canola	nucleus	86.88	89.53
CDY14184	Canola	cytosol	62.03	78.0
CDY51654	Canola	cytosol	64.69	77.09
CDY03544	Canola	nucleus	71.56	73.4
CDX72220	Canola	nucleus	71.56	73.28
AT4G30200.2	Thale cress	nucleus	72.66	65.13
CDY29247	Canola	cytosol, nucleus, plastid	38.12	61.77
CDY59604	Canola	nucleus	38.12	60.25
VIT_11s0052g00830.t01	Wine grape	nucleus	51.25	44.44
Solyc07g018270.2.1	Tomato	cytosol	49.38	42.76
KRH02856	Soybean	nucleus	48.28	41.93
CDY47942	Canola	nucleus	36.88	41.92
KRH19033	Soybean	nucleus	48.12	41.85
CDY42262	Canola	nucleus	36.25	41.21
CDY11872	Canola	mitochondrion	35.0	39.37
CDX88618	Canola	mitochondrion	34.84	38.32
GSMUA_Achr5P16400_001	Banana	cytosol	34.53	38.3
GSMUA_Achr3P05080_001	Banana	cytosol	38.12	38.12
GSMUA_Achr9P13690_001	Banana	plasma membrane	38.75	37.35
GSMUA_Achr4P02170_001	Banana	cytosol	38.12	37.14
PGSC0003DMT400019884	Potato	cytosol	19.53	33.88
Os02t0152500-01	Rice	nucleus	38.28	32.71
KXG29488	Sorghum	nucleus	38.75	32.59
CDX77426	Canola	cytosol	17.03	32.15
Zm00001d053875_P001	Maize	cytosol, plastid	38.12	32.11
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	35.94	30.63
TraesCS6D01G113600.1	Wheat	nucleus	35.62	30.4
TraesCS6A01G123400.1	Wheat	nucleus	35.31	30.13
TraesCS6B01G151600.2	Wheat	nucleus	35.31	30.13
CDX77427	Canola	nucleus	27.97	30.08
Zm00001d015293_P015	Maize	nucleus, plastid	38.75	29.35
HORVU7Hr1G099250.1	Barley	cytosol	36.09	28.52
CDY39555	Canola	nucleus	28.28	27.98
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	35.31	27.56
TraesCS7A01G433000.1	Wheat	cytosol	34.84	27.26

Protein Annotations

MapMan:12.3.3.1.2.2	Gene3D:2.60.40.10	UniProt:A0A078GU42	EnsemblPlants:CDY28168	ProteinID:CDY28168	ProteinID:CDY28168.1
InterPro:FN3_dom	InterPro:FN3_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00039881001
InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Oberon_PHD	PFAM:PF00041	PFAM:PF07227
PFscan:PS50853	PANTHER:PTHR21736	PANTHER:PTHR21736:SF13	SUPFAM:SSF49265	UniParc:UPI0004EE0F4A	SEG:seg

Description

BnaA01g06810DBnaA01g06810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU42]

Coordinates

chrLK032216:-:76705..80232

Molecular Weight (calculated)

71221.1 Da

IEP (calculated)

7.925

GRAVY (calculated)

-0.569

Length

640 amino acids

Sequence
(BLAST)

001: MSVDEKRQLV YDLSKQSHLA TEVLQAWSRQ EILQILCAEM GKERKYTGLT KVKIIEALLK LVSEKNSGDY DENNKKNKKK RDSECLPVQR NSKRQRKVDE
101: PTRYVAPTSN NNSSGSCNNA IYCNNLACRA ILREGDSFCR RCSCCICRKY DDNKDPSLWL TCSSDPPFEG DSCGFSCHLE CAFESEKSGL KESEGGCCFY
201: CVSCGKPNSL LECWKKQLTI ARETRRVDVL CYRLLLVQKL TKGSSKYRNL CEAVDEAVKS LEADVGPLTG LPLKMGRGIV NRLQSGPDVQ KLCSSALESL
301: ETPPEVAALP SQRSSKMQHD CYHGLNNEVS ADTATTVSTK IRFEDVNATS LTVILASNEV TSPGNIVHYS IWHRKATEKE YQEKSTCTLF TPNARFVVSG
401: LAPASEYCFK VVSYSGTREL GVDEINVLTR NEEERSESPL TNCSTLSSNP SSVEAESNNG YIVPQNEIKN SPTDENAAKR TTEIVQTEKK EAVPDKNRET
501: LNPVTTTNLL PITPFRSDKT KNRQARKGKS VKENGDHHSA NGGSESGLEH CVKIIRQLEC SGHIEKEFRQ KFLTWYGLRA TPQEIRVVKI FIDTFADDPV
601: ALAEQLIHSF SDRVSSKRSA IGGGGASAVV QSGFCMKLWH

Best Arabidopsis Sequence Match ( AT4G30200.2 )
(BLAST)

001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDC SYVLSNEISA DTATTGSTKI RFEDVNATSL TVVLASNEIP SPPNIVHYSI
401: WHRKVPEKDY PEKSTCTLFI PNTRFVVSGL APASEYCFKV VSYSGTREMG VDEINVLTRS AEEGANCSSA VERSVSPLTN CSTLSSNPSS VEAESNNDYI
501: VPKKPSSKNE DNNSPSVDES AAKRMKRTTD SDIVQIEKDV EQIVLLDDEE QEAVLDKTES ETPVVVTTKS LVGNRNSSDA SLPITPFRSD EIKNRQARIE
601: ISMKDNCNNG DHSANGGTES GLEHCVKIIR QLECSGHIDK NFRQKFLTWY SLRATSQEIR VVKIFIDTFI DDPMALAEQL IDTFDDRVSI KRSAVGGSGA
701: SAVVPSGFCM KLWH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.