CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88618	Canola	mitochondrion	84.53	82.65
CDY42262	Canola	nucleus	70.65	71.4
CDY47942	Canola	nucleus	67.66	68.38
AT5G57380.1	Thale cress	nucleus	69.07	63.39
CDY29247	Canola	cytosol, nucleus, plastid	30.76	44.3
CDY59604	Canola	nucleus	30.76	43.21
CDY14184	Canola	cytosol	36.03	40.27
CDY51654	Canola	cytosol	35.68	37.8
CDY03544	Canola	nucleus	39.72	36.22
CDX68633	Canola	nucleus	39.02	35.75
CDY28168	Canola	nucleus	39.37	35.0
CDX72220	Canola	nucleus	38.31	34.88
VIT_11s0052g00830.t01	Wine grape	nucleus	43.94	33.88
KRH02856	Soybean	nucleus	43.06	33.24
KRH19033	Soybean	nucleus	42.71	33.02
Solyc07g018270.2.1	Tomato	cytosol	42.18	32.48
GSMUA_Achr4P02170_001	Banana	cytosol	37.43	32.42
GSMUA_Achr3P05080_001	Banana	cytosol	36.38	32.34
GSMUA_Achr9P13690_001	Banana	plasma membrane	36.73	31.48
GSMUA_Achr5P16400_001	Banana	cytosol	30.05	29.64
CDX77426	Canola	cytosol	17.4	29.2
Os02t0152500-01	Rice	nucleus	35.33	26.84
Zm00001d053875_P001	Maize	cytosol, plastid	35.5	26.58
KXG29488	Sorghum	nucleus	34.62	25.89
CDX77427	Canola	nucleus	26.54	25.38
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	32.86	24.9
TraesCS6B01G151600.2	Wheat	nucleus	32.34	24.53
TraesCS6A01G123400.1	Wheat	nucleus	32.16	24.4
TraesCS6D01G113600.1	Wheat	nucleus	32.16	24.4
Zm00001d015293_P015	Maize	nucleus, plastid	35.5	23.91
TraesCS7A01G433000.1	Wheat	cytosol	34.27	23.84
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	34.09	23.66
PGSC0003DMT400019884	Potato	cytosol	14.94	23.04
CDY39555	Canola	nucleus	26.19	23.03
HORVU7Hr1G099250.1	Barley	cytosol	32.34	22.72

Protein Annotations

EnsemblPlants:CDY11872	EnsemblPlantsGene:GSBRNA2T00060706001	InterPro:Oberon_PHD	PANTHER:PTHR21736	PANTHER:PTHR21736:SF13	PFAM:PF07227
ProteinID:CDY11872	ProteinID:CDY11872.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EDFA8B	UniProt:A0A078FFV2
MapMan:12.3.3.1.2.2	:	:	:	:	:

Description

BnaC03g12980DBnaC03g12980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFV2]

Coordinates

chrLK032015:+:176400..178737

Molecular Weight (calculated)

63520.7 Da

IEP (calculated)

7.373

GRAVY (calculated)

-0.499

Length

569 amino acids

Sequence
(BLAST)

001: MFFKRMRASW FCLLALSKIW RFDSNVGPEE DMDPSSFQRV VCTEFPKKKG LSVSERRELI HALSKQPEEA SELLNSWSRD EIMKIICAEM GKERKYTGLA
101: KPKLIENLLN LVSRPLGETS CPNRKGSRKK QKTTTSYIIC CENLACRAAL GSEDTFCRRC SCCVCQNFDE NKDLSLWIAC EGCGLSCHLE CALKEDGYGI
201: GFNDGSFHCV FCGKDSDLLG CWRKQVNVAK ETRHVDVLCY RVSLGQKLLR GTRRYQNLLE LMDEAVKKLE GDVGPLVSWE MKMARGIVNR LASGSQVQKL
301: CYLAMEALDK MVSPLSESVS GQGDILSVRV EEIQARSVTV RLDSEEPSSS SQNQITGVKD DGDEAGNRQR LLTNSSSGLC SNPSLPEDES NNVSKSCCKE
401: NSDNNNAEHC SAGEVESEIE EERVLKRKVN EIEGGDLLVI TPCKRDAFDG KQGGNKRSKS RTSTKKPETN VAENGVGGDK DLGHIVKTIR CLEQEGHIDK
501: SFRERFLTWY SLRATHREVK VVKVFVETFK DDLSSLGQQL VDTFSECVQS KRSSTTGGVP AGICLKLWH

Best Arabidopsis Sequence Match ( AT5G57380.1 )
(BLAST)

001: MQAASLSKIW RFDGNVGPEN MDSSSFEDNE CIETCKPNVL NVSERRELIH ALSNQPEEAS ELLNSWSRNE IMKIICAEMG KERKYTGLNK PKLIENLLNL
101: VSRPLGETSC SDRRNSRKKE KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC
201: AYCGKDNDLL GCWRKQVKVA KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD
301: KVVSPSESVS GQGDKMTVRV EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD
401: ESELRFTTLK DDGDEAGDQQ SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG
501: KQGGNKRFKS RTVSLNEKPE INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL
601: SKRSSTNGVV PAGICLKLWH

Arabidopsis Description

VIN3VIN3 [Source:UniProtKB/TrEMBL;Acc:A0A178UF19]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.