Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11872 | Canola | mitochondrion | 63.39 | 69.07 |
| Bra006824.1-P | Field mustard | nucleus | 53.71 | 68.24 |
| CDY47942 | Canola | nucleus | 61.45 | 67.67 |
| Bra020445.1-P | Field mustard | nucleus | 60.97 | 67.62 |
| CDY42262 | Canola | nucleus | 59.84 | 65.9 |
| CDX88618 | Canola | mitochondrion | 59.35 | 63.23 |
| VIT_11s0052g00830.t01 | Wine grape | nucleus | 45.32 | 38.08 |
| KRH02856 | Soybean | nucleus | 44.35 | 37.31 |
| KRH19033 | Soybean | nucleus | 44.19 | 37.23 |
| AT4G30200.2 | Thale cress | nucleus | 41.77 | 36.27 |
| GSMUA_Achr3P05080_001 | Banana | cytosol | 37.1 | 35.94 |
| Solyc07g018270.2.1 | Tomato | cytosol | 42.74 | 35.86 |
| GSMUA_Achr4P02170_001 | Banana | cytosol | 36.94 | 34.86 |
| GSMUA_Achr5P16400_001 | Banana | cytosol | 32.1 | 34.49 |
| AT2G18880.1 | Thale cress | nucleus | 29.19 | 34.22 |
| GSMUA_Achr9P13690_001 | Banana | plasma membrane | 35.81 | 33.43 |
| Os02t0152500-01 | Rice | nucleus | 36.13 | 29.91 |
| PGSC0003DMT400019884 | Potato | cytosol | 17.26 | 29.0 |
| KXG29488 | Sorghum | nucleus | 35.48 | 28.91 |
| Zm00001d053875_P001 | Maize | cytosol, plastid | 35.32 | 28.82 |
| Zm00001d015293_P015 | Maize | nucleus, plastid | 36.61 | 26.86 |
| AT3G24440.1 | Thale cress | nucleus | 25.97 | 26.74 |
| TraesCS6A01G123400.1 | Wheat | nucleus | 32.1 | 26.53 |
| TraesCS7A01G433000.1 | Wheat | cytosol | 35.0 | 26.53 |
| HORVU6Hr1G022770.6 | Barley | cytosol, nucleus, plastid | 32.1 | 26.5 |
| TraesCS7D01G424600.1 | Wheat | cytosol, nucleus, plasma membrane | 35.0 | 26.46 |
| TraesCS6D01G113600.1 | Wheat | nucleus | 31.94 | 26.4 |
| TraesCS6B01G151600.2 | Wheat | nucleus | 31.61 | 26.13 |
| HORVU7Hr1G099250.1 | Barley | cytosol | 33.39 | 25.56 |
| AT2G18870.1 | Thale cress | nucleus, plasma membrane | 8.87 | 23.01 |
Protein Annotations
| MapMan:12.3.3.1.2.2 | Gene3D:2.60.40.10 | EntrezGene:835844 | UniProt:A0A178UF19 | ProteinID:AED96894.1 | ProteinID:ANM71091.1 |
| ArrayExpress:AT5G57380 | EnsemblPlantsGene:AT5G57380 | RefSeq:AT5G57380 | TAIR:AT5G57380 | RefSeq:AT5G57380-TAIR-G | EnsemblPlants:AT5G57380.1 |
| TAIR:AT5G57380.1 | EMBL:AY446960 | Unigene:At.66759 | ProteinID:BAB08475.1 | InterPro:FN3_dom | InterPro:FN3_sf |
| GO:GO:0001666 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005677 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010048 |
| GO:GO:0016043 | GO:GO:0016607 | GO:GO:0019538 | GO:GO:0040029 | GO:GO:0045814 | GO:GO:0046872 |
| GO:GO:0051571 | GO:GO:0061087 | GO:GO:0070417 | InterPro:IPR003961 | InterPro:IPR013783 | InterPro:Ig-like_fold |
| RefSeq:NP_001332646.1 | RefSeq:NP_200548.2 | ProteinID:OAO92506.1 | InterPro:Oberon_PHD | PFAM:PF00041 | PFAM:PF07227 |
| PO:PO:0000025 | PO:PO:0000037 | PFscan:PS50853 | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF13 | UniProt:Q9FIE3 |
| SUPFAM:SSF49265 | UniParc:UPI0000E572AB | Symbol:VIN3 | SEG:seg | : | : |
Description
VIN3VIN3 [Source:UniProtKB/TrEMBL;Acc:A0A178UF19]
Coordinates
chr5:-:23246395..23249504
Molecular Weight (calculated)
69351.1 Da
IEP (calculated)
5.999
GRAVY (calculated)
-0.587
Length
620 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAASLSKIW RFDGNVGPEN MDSSSFEDNE CIETCKPNVL NVSERRELIH ALSNQPEEAS ELLNSWSRNE IMKIICAEMG KERKYTGLNK PKLIENLLNL
101: VSRPLGETSC SDRRNSRKKE KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC
201: AYCGKDNDLL GCWRKQVKVA KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD
301: KVVSPSESVS GQGDKMTVRV EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD
401: ESELRFTTLK DDGDEAGDQQ SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG
501: KQGGNKRFKS RTVSLNEKPE INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL
601: SKRSSTNGVV PAGICLKLWH
101: VSRPLGETSC SDRRNSRKKE KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC
201: AYCGKDNDLL GCWRKQVKVA KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD
301: KVVSPSESVS GQGDKMTVRV EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD
401: ESELRFTTLK DDGDEAGDQQ SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG
501: KQGGNKRFKS RTVSLNEKPE INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL
601: SKRSSTNGVV PAGICLKLWH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.