Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29247 | Canola | cytosol, nucleus, plastid | 38.94 | 52.15 |
| CDY59604 | Canola | nucleus | 38.37 | 50.12 |
| Bra024456.1-P | Field mustard | nucleus | 40.83 | 50.12 |
| AT4G30200.2 | Thale cress | nucleus | 47.07 | 34.87 |
| GSMUA_Achr3P05080_001 | Banana | cytosol | 37.24 | 30.78 |
| GSMUA_Achr9P13690_001 | Banana | plasma membrane | 37.62 | 29.97 |
| GSMUA_Achr4P02170_001 | Banana | cytosol | 36.86 | 29.68 |
| VIT_11s0052g00830.t01 | Wine grape | nucleus | 41.4 | 29.67 |
| GSMUA_Achr5P16400_001 | Banana | cytosol | 31.95 | 29.29 |
| AT5G57380.1 | Thale cress | nucleus | 34.22 | 29.19 |
| KRH02856 | Soybean | nucleus | 39.32 | 28.22 |
| KRH19033 | Soybean | nucleus | 38.37 | 27.58 |
| Solyc07g018270.2.1 | Tomato | cytosol | 38.37 | 27.47 |
| Os02t0152500-01 | Rice | nucleus | 34.97 | 24.7 |
| AT2G18870.1 | Thale cress | nucleus, plasma membrane | 11.15 | 24.69 |
| HORVU6Hr1G022770.6 | Barley | cytosol, nucleus, plastid | 33.27 | 23.44 |
| Zm00001d053875_P001 | Maize | cytosol, plastid | 33.65 | 23.42 |
| KXG29488 | Sorghum | nucleus | 33.65 | 23.39 |
| TraesCS6A01G123400.1 | Wheat | nucleus | 33.08 | 23.33 |
| TraesCS6B01G151600.2 | Wheat | nucleus | 33.08 | 23.33 |
| TraesCS6D01G113600.1 | Wheat | nucleus | 32.89 | 23.2 |
| HORVU7Hr1G099250.1 | Barley | cytosol | 34.78 | 22.72 |
| TraesCS7D01G424600.1 | Wheat | cytosol, nucleus, plasma membrane | 35.16 | 22.68 |
| AT3G24440.1 | Thale cress | nucleus | 25.71 | 22.59 |
| TraesCS7A01G433000.1 | Wheat | cytosol | 34.78 | 22.49 |
| Zm00001d015293_P015 | Maize | nucleus, plastid | 33.27 | 20.83 |
| PGSC0003DMT400019884 | Potato | cytosol | 12.1 | 17.34 |
Protein Annotations
| MapMan:12.3.3.1.2.2 | Gene3D:2.60.40.10 | EntrezGene:816404 | ProteinID:AAC09024.1 | ProteinID:AEC06820.1 | ArrayExpress:AT2G18880 |
| EnsemblPlantsGene:AT2G18880 | RefSeq:AT2G18880 | TAIR:AT2G18880 | RefSeq:AT2G18880-TAIR-G | EnsemblPlants:AT2G18880.1 | TAIR:AT2G18880.1 |
| EMBL:AY262053 | EMBL:AY924744 | Unigene:At.39929 | EMBL:EF064793 | InterPro:FN3_dom | InterPro:FN3_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0046872 |
| GO:GO:0070417 | InterPro:IPR003961 | InterPro:IPR013783 | InterPro:Ig-like_fold | RefSeq:NP_179478.4 | InterPro:Oberon_PHD |
| PFAM:PF00041 | PFAM:PF07227 | PO:PO:0009025 | PFscan:PS50853 | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF13 |
| UniProt:Q5BPT4 | SUPFAM:SSF49265 | UniParc:UPI00004EA615 | Symbol:VEL2 | : | : |
Description
VIL3VIN3-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5BPT4]
Coordinates
chr2:+:8172189..8178995
Molecular Weight (calculated)
59836.8 Da
IEP (calculated)
7.781
GRAVY (calculated)
-0.416
Length
529 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFHKGAAG DSMGSSKMSF DQRRQLVLKL SKESEREFKE VLKDWSCNEI RELLRAESKK DIKYTGLTKD EIITRLFNIV SKKNTRDHEV EEIIPSPKRQ
101: KRDLVTPLAK AKGKGKMYCQ NLACQNKLRE EATFCKRCSC CICFKYDDNK DPSLWLTCNS DSQFDGESCG LSCHLNCAFD SEKSGLKEDT PSSDIDGCFN
201: CVSCGKTNSK IECLKKQLII ANEERRVGVF CYRILLAHKL LKGTKKYIIV SEEVEKAVMH LKNEFGVPIS CLPSKMSRGL VNRLCCAEKV KKHCSSALKE
301: LDGLPLPSTI QGSMKIRIES VLATSVTFDI EAEESFSWGD TNHYRMVYRK VSEKHSSKDL TRELFSTSSH QRFTVMELTP ATEYWFKIVS FSGVEELSVD
401: EFIVSTKTLQ DEEVAAVLLN MSNCNNANKM EKSGSCSFGF EECVNLIRQL ECSGQVKSDF RKKFLTWYCL KATDKEKHVV EIFVDTFKDD KEALAKQLID
501: TFSDCITRKH PEIGGGSESA GVSLILLQD
101: KRDLVTPLAK AKGKGKMYCQ NLACQNKLRE EATFCKRCSC CICFKYDDNK DPSLWLTCNS DSQFDGESCG LSCHLNCAFD SEKSGLKEDT PSSDIDGCFN
201: CVSCGKTNSK IECLKKQLII ANEERRVGVF CYRILLAHKL LKGTKKYIIV SEEVEKAVMH LKNEFGVPIS CLPSKMSRGL VNRLCCAEKV KKHCSSALKE
301: LDGLPLPSTI QGSMKIRIES VLATSVTFDI EAEESFSWGD TNHYRMVYRK VSEKHSSKDL TRELFSTSSH QRFTVMELTP ATEYWFKIVS FSGVEELSVD
401: EFIVSTKTLQ DEEVAAVLLN MSNCNNANKM EKSGSCSFGF EECVNLIRQL ECSGQVKSDF RKKFLTWYCL KATDKEKHVV EIFVDTFKDD KEALAKQLID
501: TFSDCITRKH PEIGGGSESA GVSLILLQD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.