Factsheet for GSMUA_Achr9P13690_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P02170_001	Banana	cytosol	61.9	62.56
GSMUA_Achr3P05080_001	Banana	cytosol	58.58	60.78
GSMUA_Achr5P16400_001	Banana	cytosol	46.69	53.73
CDY14184	Canola	cytosol	35.69	46.56
CDY29247	Canola	cytosol, nucleus, plastid	27.26	45.82
CDY59604	Canola	nucleus	26.96	44.2
Bra024456.1-P	Field mustard	nucleus	28.31	43.62
CDY51654	Canola	cytosol	34.79	43.02
Os02t0152500-01	Rice	nucleus	46.84	41.52
VIT_11s0052g00830.t01	Wine grape	nucleus	45.93	41.33
KRH02856	Soybean	nucleus	44.88	40.43
KRH19033	Soybean	nucleus	44.58	40.22
Zm00001d053875_P001	Maize	cytosol, plastid	45.93	40.13
CDY03544	Canola	nucleus	37.65	40.06
KXG29488	Sorghum	nucleus	45.78	39.95
CDX68633	Canola	nucleus	37.05	39.61
TraesCS6D01G113600.1	Wheat	nucleus	44.73	39.6
TraesCS6B01G151600.2	Wheat	nucleus	44.43	39.33
CDX72220	Canola	nucleus	36.9	39.2
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	44.28	39.15
TraesCS6A01G123400.1	Wheat	nucleus	43.98	38.93
CDY28168	Canola	nucleus	37.35	38.75
Bra010297.1-P	Field mustard	nucleus	37.35	38.75
Bra011173.1-P	Field mustard	nucleus	37.2	38.59
GSMUA_Achr8P33580_001	Banana	plasma membrane	38.4	38.0
Bra024097.1-P	Field mustard	cytosol	36.45	37.87
AT2G18880.1	Thale cress	nucleus	29.97	37.62
Solyc07g018270.2.1	Tomato	cytosol	41.57	37.35
CDY11872	Canola	mitochondrion	31.48	36.73
Zm00001d015293_P015	Maize	nucleus, plastid	46.54	36.57
AT4G30200.2	Thale cress	nucleus	38.86	36.13
AT5G57380.1	Thale cress	nucleus	33.43	35.81
Bra006824.1-P	Field mustard	nucleus	26.2	35.66
CDY42262	Canola	nucleus	30.12	35.52
CDY47942	Canola	nucleus	29.67	34.99
Bra020445.1-P	Field mustard	nucleus	29.37	34.88
GSMUA_Achr10P...	Banana	mitochondrion	10.99	34.6
CDX88618	Canola	mitochondrion	30.27	34.54
GSMUA_Achr4P01640_001	Banana	nucleus	33.13	34.21
TraesCS7A01G433000.1	Wheat	cytosol	40.36	32.76
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	39.61	32.07
HORVU7Hr1G099250.1	Barley	cytosol	39.01	31.98
GSMUA_Achr10P...	Banana	extracellular	11.3	31.51
PGSC0003DMT400019884	Potato	cytosol	15.36	27.64

Protein Annotations

MapMan:12.3.3.1.2.2	Gene3D:2.60.40.10	InterPro:FN3_dom	InterPro:FN3_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr9G13690_001	EnsemblPlants:GSMUA_Achr9P13690_001
EnsemblPlants:GSMUA_Achr9T13690_001	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M0U027	InterPro:Oberon_PHD
PFAM:PF00041	PFAM:PF07227	PFscan:PS50853	PANTHER:PTHR21736	PANTHER:PTHR21736:SF24	SUPFAM:SSF49265
TMHMM:TMhelix	UniParc:UPI000295DC15	:	:	:	:

Description

Putative Protein VERNALIZATION INSENSITIVE 3 [Source:GMGC_GENE;Acc:GSMUA_Achr9G13690_001]

Coordinates

chr9:+:8896965..8902101

Molecular Weight (calculated)

74268.7 Da

IEP (calculated)

7.056

GRAVY (calculated)

-0.367

Length

664 amino acids

Sequence
(BLAST)

001: MNVGVGVRCH KFDLLQTHIR GILYSEASSS IIVCFLTFFF SNYDIVCSSG LVLDPSKCSK LSIEEKRELV RELSKWPESA PEKLQTWSRR DILEILCAEI
101: GKERKYTSLT KQKMIEYLFR VVSDKKSGEH TKDRDSAQDL SSDNIRYCKN SACRATLNIE DAFCKRCSCC ICHKYDDNKD PSLWLFCGSE NLSQGDSCGL
201: SSHLECVLKH EKGGVMKSGQ CTRLDGGYYC IYCGKVNDLL GCWKKQLMIA KDARRVDVLC YRISLSHKLL NLTERYGSLH EIVETAQKKL EAEVGSIDDL
301: PNMARGIVNR LSVGAEVQKL CACAVDLLDT MRLGGLSATA QVQQTGSVSS SFIKFEQISQ TSLTAVLDLE NNSSLGQEVA GFTVWHRKVD TPEYPKKASF
401: SLLNPKRRFL VTELAPATEY MFKVVAFGDT GDLDTCEVGT KTKGISLDNS MGLAPQTAVL EPHCQSPKTN KFDECEKPEI LETEKSTDHA QKDAGHQKNS
501: TNSMENNQTS DIPRSENESN APVVNEMVIV PFVQSNSTLP ATPCRVEAGT EGSERCSKGK PSVKKFEDGL MKPGMEPGTY EYCVKVIRWL ECERHIETNF
601: RVKFLTWFSL RATPQERRIV NVYVDTLIDD PVSLAGQLVD TFSETVCSKR PPRVPTGFCA KLWH

Best Arabidopsis Sequence Match ( AT4G30200.3 )
(BLAST)

001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDT ATTGSTKIRF EDVNATSLTV VLASNEIPSP PNIVHYSIWH RKVPEKDYPE
401: KSTCTLFIPN TRFVVSGLAP ASEYCFKVVS YSGTREMGVD EINVLTRSAE EGANCSSAVE RSVSPLTNCS TLSSNPSSVE AESNNDYIVP KKPSSKNEDN
501: NSPSVDESAA KRMKRTTDSD IVQIEKDVEQ IVLLDDEEQE AVLDKTESET PVVVTTKSLV GNRNSSDASL PITPFRSDEI KNRQARIEIS MKDNCNNGDH
601: SANGGTESGL EHCVKIIRQL ECSGHIDKNF RQKFLTWYSL RATSQEIRVV KIFIDTFIDD PMALAEQLID TFDDRVSIKR SAVGGSGASA VVPSGFCMKL
701: WH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.