Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03544 | Canola | nucleus | 90.16 | 92.47 |
| Bra011173.1-P | Field mustard | nucleus | 71.25 | 71.25 |
| Bra024097.1-P | Field mustard | cytosol | 67.34 | 67.45 |
| AT4G30200.2 | Thale cress | nucleus | 69.38 | 62.18 |
| Bra024456.1-P | Field mustard | nucleus | 39.84 | 59.16 |
| KRH02856 | Soybean | nucleus | 50.78 | 44.1 |
| VIT_11s0052g00830.t01 | Wine grape | nucleus | 50.31 | 43.63 |
| KRH19033 | Soybean | nucleus | 50.0 | 43.48 |
| Bra020445.1-P | Field mustard | nucleus | 37.19 | 42.58 |
| Bra006824.1-P | Field mustard | nucleus | 31.41 | 41.19 |
| Solyc07g018270.2.1 | Tomato | cytosol | 47.34 | 41.0 |
| GSMUA_Achr3P05080_001 | Banana | cytosol | 38.12 | 38.12 |
| GSMUA_Achr9P13690_001 | Banana | plasma membrane | 38.75 | 37.35 |
| GSMUA_Achr4P02170_001 | Banana | cytosol | 38.12 | 37.14 |
| GSMUA_Achr5P16400_001 | Banana | cytosol | 33.44 | 37.09 |
| PGSC0003DMT400019884 | Potato | cytosol | 18.75 | 32.52 |
| Os02t0152500-01 | Rice | nucleus | 37.81 | 32.31 |
| Zm00001d053875_P001 | Maize | cytosol, plastid | 37.97 | 31.97 |
| KXG29488 | Sorghum | nucleus | 37.34 | 31.41 |
| Bra015040.1-P | Field mustard | cytosol | 16.56 | 31.27 |
| HORVU6Hr1G022770.6 | Barley | cytosol, nucleus, plastid | 36.25 | 30.89 |
| TraesCS6A01G123400.1 | Wheat | nucleus | 35.94 | 30.67 |
| TraesCS6B01G151600.2 | Wheat | nucleus | 35.78 | 30.53 |
| TraesCS6D01G113600.1 | Wheat | nucleus | 35.78 | 30.53 |
| Zm00001d015293_P015 | Maize | nucleus, plastid | 37.97 | 28.76 |
| Bra015039.1-P | Field mustard | nucleus | 26.72 | 28.74 |
| HORVU7Hr1G099250.1 | Barley | cytosol | 35.0 | 27.65 |
| TraesCS7D01G424600.1 | Wheat | cytosol, nucleus, plasma membrane | 35.16 | 27.44 |
| TraesCS7A01G433000.1 | Wheat | cytosol | 34.69 | 27.14 |
Protein Annotations
| MapMan:12.3.3.1.2.2 | Gene3D:2.60.40.10 | EnsemblPlantsGene:Bra010297 | EnsemblPlants:Bra010297.1 | EnsemblPlants:Bra010297.1-P | InterPro:FN3_dom |
| InterPro:FN3_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR003961 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | UniProt:M4D1E8 | InterPro:Oberon_PHD | PFAM:PF00041 | PFAM:PF07227 | PFscan:PS50853 |
| PANTHER:PTHR21736 | PANTHER:PTHR21736:SF13 | SMART:SM00060 | SUPFAM:SSF49265 | UniParc:UPI00025470B7 | SEG:seg |
Description
AT4G30200 (E=1e-202) VEL1 | Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.
Coordinates
chrA08:+:13712642..13714564
Molecular Weight (calculated)
70881.0 Da
IEP (calculated)
7.510
GRAVY (calculated)
-0.505
Length
640 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVEEKRQLV YELSKQSSHL APEVLQAWSR QEILQILCAE MGKERKYTGL TKVKIIETLM KIVSEKNAGE CDENKKKRDS DCCLPVQRSA KRPRKVDNPT
101: RYVAPTSNNN ASGEEKTTYC KNLACRAVMR QEDAFCRRCS CCICRKYDEN KDPSLWLTCS SDPPFEGGSC GSSCHLECAF ESEKSGLAKR SEECCFYCVS
201: CGKPNSLLEC WKKQLTIAKE ARRVDILCYR LLLVQKLVKG SSKYRNVCEA VEKAVKCLEA DVGPLTMKMG RGIVNRLNSG PDVQKLCSSA LESLQTLETK
301: PPEVAALPSP RSSNGLSSEI SADTATTVPP TKIRFEDVNA TSLTVILASN EVDSPANIVH YSIWHRKVTE KEYQEKSTCT LFTPNARFVV SGLAPASEYC
401: FKVVSFSGTR EMGVDVINVM TRGPEERSES PLTNCSTLSS NPSSVESESN NGKKDSPSTE ENDAKRIVES DLVEAEKNVE GVVLLDEVEE EAVQDKNVAV
501: TTTNGNSSPV TPFKSDQTKN RQVRNKKLVK DNGNNGDHHS ANGGAESGLE HCVKIIRQLE CSGHIEKDFR QKFLTWYSLR ATPQESRVVK IFIDTFTDDP
601: VALAEQLVHT FSDRVSMKRS AIGGGASAVV QSGFCMKLWH
101: RYVAPTSNNN ASGEEKTTYC KNLACRAVMR QEDAFCRRCS CCICRKYDEN KDPSLWLTCS SDPPFEGGSC GSSCHLECAF ESEKSGLAKR SEECCFYCVS
201: CGKPNSLLEC WKKQLTIAKE ARRVDILCYR LLLVQKLVKG SSKYRNVCEA VEKAVKCLEA DVGPLTMKMG RGIVNRLNSG PDVQKLCSSA LESLQTLETK
301: PPEVAALPSP RSSNGLSSEI SADTATTVPP TKIRFEDVNA TSLTVILASN EVDSPANIVH YSIWHRKVTE KEYQEKSTCT LFTPNARFVV SGLAPASEYC
401: FKVVSFSGTR EMGVDVINVM TRGPEERSES PLTNCSTLSS NPSSVESESN NGKKDSPSTE ENDAKRIVES DLVEAEKNVE GVVLLDEVEE EAVQDKNVAV
501: TTTNGNSSPV TPFKSDQTKN RQVRNKKLVK DNGNNGDHHS ANGGAESGLE HCVKIIRQLE CSGHIEKDFR QKFLTWYSLR ATPQESRVVK IFIDTFTDDP
601: VALAEQLVHT FSDRVSMKRS AIGGGASAVV QSGFCMKLWH
001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDC SYVLSNEISA DTATTGSTKI RFEDVNATSL TVVLASNEIP SPPNIVHYSI
401: WHRKVPEKDY PEKSTCTLFI PNTRFVVSGL APASEYCFKV VSYSGTREMG VDEINVLTRS AEEGANCSSA VERSVSPLTN CSTLSSNPSS VEAESNNDYI
501: VPKKPSSKNE DNNSPSVDES AAKRMKRTTD SDIVQIEKDV EQIVLLDDEE QEAVLDKTES ETPVVVTTKS LVGNRNSSDA SLPITPFRSD EIKNRQARIE
601: ISMKDNCNNG DHSANGGTES GLEHCVKIIR QLECSGHIDK NFRQKFLTWY SLRATSQEIR VVKIFIDTFI DDPMALAEQL IDTFDDRVSI KRSAVGGSGA
701: SAVVPSGFCM KLWH
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDC SYVLSNEISA DTATTGSTKI RFEDVNATSL TVVLASNEIP SPPNIVHYSI
401: WHRKVPEKDY PEKSTCTLFI PNTRFVVSGL APASEYCFKV VSYSGTREMG VDEINVLTRS AEEGANCSSA VERSVSPLTN CSTLSSNPSS VEAESNNDYI
501: VPKKPSSKNE DNNSPSVDES AAKRMKRTTD SDIVQIEKDV EQIVLLDDEE QEAVLDKTES ETPVVVTTKS LVGNRNSSDA SLPITPFRSD EIKNRQARIE
601: ISMKDNCNNG DHSANGGTES GLEHCVKIIR QLECSGHIDK NFRQKFLTWY SLRATSQEIR VVKIFIDTFI DDPMALAEQL IDTFDDRVSI KRSAVGGSGA
701: SAVVPSGFCM KLWH
Arabidopsis Description
VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.