Factsheet for Bra024097.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51654	Canola	cytosol	82.94	98.7
Bra011173.1-P	Field mustard	nucleus	72.3	72.19
Bra010297.1-P	Field mustard	nucleus	67.45	67.34
AT4G30200.2	Thale cress	nucleus	66.82	59.8
Bra024456.1-P	Field mustard	nucleus	37.09	54.99
VIT_11s0052g00830.t01	Wine grape	nucleus	49.14	42.55
KRH02856	Soybean	nucleus	48.83	42.33
KRH19033	Soybean	nucleus	48.36	41.98
Bra020445.1-P	Field mustard	nucleus	36.46	41.68
Solyc07g018270.2.1	Tomato	cytosol	46.95	40.6
Bra006824.1-P	Field mustard	nucleus	30.36	39.75
GSMUA_Achr3P05080_001	Banana	cytosol	37.09	37.03
GSMUA_Achr5P16400_001	Banana	cytosol	33.33	36.92
GSMUA_Achr4P02170_001	Banana	cytosol	37.72	36.68
GSMUA_Achr9P13690_001	Banana	plasma membrane	37.87	36.45
Bra015040.1-P	Field mustard	cytosol	16.74	31.56
Os02t0152500-01	Rice	nucleus	36.78	31.38
Zm00001d053875_P001	Maize	cytosol, plastid	37.09	31.18
PGSC0003DMT400019884	Potato	cytosol	18.0	31.17
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	35.99	30.63
TraesCS6A01G123400.1	Wheat	nucleus	35.68	30.4
KXG29488	Sorghum	nucleus	36.15	30.35
TraesCS6D01G113600.1	Wheat	nucleus	35.52	30.27
TraesCS6B01G151600.2	Wheat	nucleus	35.37	30.13
Bra015039.1-P	Field mustard	nucleus	26.92	28.91
Zm00001d015293_P015	Maize	nucleus, plastid	37.4	28.28
HORVU7Hr1G099250.1	Barley	cytosol	34.9	27.53
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	34.27	26.71
TraesCS7A01G433000.1	Wheat	cytosol	33.49	26.16

Protein Annotations

MapMan:12.3.3.1.2.2	Gene3D:2.60.40.10	EnsemblPlantsGene:Bra024097	EnsemblPlants:Bra024097.1	EnsemblPlants:Bra024097.1-P	InterPro:FN3_dom
InterPro:FN3_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003961	InterPro:IPR013783
InterPro:Ig-like_fold	UniProt:M4E5P3	InterPro:Oberon_PHD	PFAM:PF00041	PFAM:PF07227	PFscan:PS50853
PANTHER:PTHR21736	PANTHER:PTHR21736:SF13	SMART:SM00060	SUPFAM:SSF49265	UniParc:UPI0002540DB5	SEG:seg

Description

AT5G57380 (E=1e-109) VIN3 | VIN3 (VERNALIZATION INSENSITIVE 3); protein binding / zinc ion binding

Coordinates

chrA03:-:27664772..27667540

Molecular Weight (calculated)

70110.9 Da

IEP (calculated)

7.354

GRAVY (calculated)

-0.416

Length

639 amino acids

Sequence
(BLAST)

001: MDSSVDGAAG DSSKSSGMSV EEKIHLVYEL SAQPHLATEV LQAWSRKDIL QILCAEMGKE RKYTGLTKVK LIETLLKTIS KKNSGDHDGN KRGSSDSLPL
101: HRNSKRPRKV DNPTRYVVPT ISNASVSCNN LACRAVMGQG DSFCRRCSCC ICLKYDDNKD PSLWLTCSAD HPFEGDSCGF SCHLECAFKS EKSGLARDKE
201: GEEECCFYCV SCGKPNSLLE CWKKQLTIAK ETRRVDVLSY RLLLVQKLIK GSTKFSNVCE VVDEAVKSLE ADVGPLSGLP MKMGRGIVNR LGSGPDVQKL
301: CSSALESLQP LETKPSYGLR NEVSADTAPT KIRFEDVNAT SLTVILASND LTSPANIVHY SIWHRKVTEK EYQEKSTCTL FTPNARFVVS GLAPASEYCF
401: KVVSFSGTRE VGVDEINVLT RSSPEEVVER SESPLTNCST LSSNPSSVEA ESNNGYIAPQ NPNKQASNVV PAEKNVEGSV LLGEEQQEAA VPVNTTNLVS
501: NRNSSDASLP ITPFRSDQTK NRQARNGKPV KENGDHHSAN GGSESGFKHC VNVIRQLESL GHIEKEFRQK FLTWYGLRAT PQEIRIVKIF IDTFADDPVD
601: LAEQLVHTFN DRVLAKRCSA VGDGASAVVK SGFCMKLWH

Best Arabidopsis Sequence Match ( AT4G30200.2 )
(BLAST)

001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDC SYVLSNEISA DTATTGSTKI RFEDVNATSL TVVLASNEIP SPPNIVHYSI
401: WHRKVPEKDY PEKSTCTLFI PNTRFVVSGL APASEYCFKV VSYSGTREMG VDEINVLTRS AEEGANCSSA VERSVSPLTN CSTLSSNPSS VEAESNNDYI
501: VPKKPSSKNE DNNSPSVDES AAKRMKRTTD SDIVQIEKDV EQIVLLDDEE QEAVLDKTES ETPVVVTTKS LVGNRNSSDA SLPITPFRSD EIKNRQARIE
601: ISMKDNCNNG DHSANGGTES GLEHCVKIIR QLECSGHIDK NFRQKFLTWY SLRATSQEIR VVKIFIDTFI DDPMALAEQL IDTFDDRVSI KRSAVGGSGA
701: SAVVPSGFCM KLWH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.