Factsheet for GSMUA_Achr5P16400_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P05080_001	Banana	cytosol	56.67	51.09
GSMUA_Achr4P02170_001	Banana	cytosol	55.29	48.55
GSMUA_Achr9P13690_001	Banana	plasma membrane	53.73	46.69
CDY14184	Canola	cytosol	34.49	39.1
CDY51654	Canola	cytosol	34.66	37.24
CDY29247	Canola	cytosol, nucleus, plastid	25.48	37.22
CDY59604	Canola	nucleus	26.0	37.04
Os02t0152500-01	Rice	nucleus	47.83	36.85
Bra024456.1-P	Field mustard	nucleus	27.38	36.66
GSMUA_Achr10P...	Banana	mitochondrion	13.34	36.49
TraesCS6B01G151600.2	Wheat	nucleus	47.31	36.4
TraesCS6D01G113600.1	Wheat	nucleus	47.14	36.27
KXG29488	Sorghum	nucleus	47.31	35.87
TraesCS6A01G123400.1	Wheat	nucleus	46.45	35.73
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	46.45	35.69
Zm00001d053875_P001	Maize	cytosol, plastid	46.97	35.66
CDX68633	Canola	nucleus	37.95	35.27
VIT_11s0052g00830.t01	Wine grape	nucleus	44.89	35.09
Bra006824.1-P	Field mustard	nucleus	29.46	34.84
KRH02856	Soybean	nucleus	44.19	34.6
CDY28168	Canola	nucleus	38.3	34.53
KRH19033	Soybean	nucleus	44.02	34.51
CDX72220	Canola	nucleus	37.26	34.4
Bra011173.1-P	Field mustard	nucleus	38.13	34.38
CDY03544	Canola	nucleus	36.4	33.65
Bra010297.1-P	Field mustard	nucleus	37.09	33.44
Bra024097.1-P	Field mustard	cytosol	36.92	33.33
Zm00001d015293_P015	Maize	nucleus, plastid	47.66	32.54
GSMUA_Achr8P33580_001	Banana	plasma membrane	37.78	32.49
Solyc07g018270.2.1	Tomato	cytosol	41.42	32.34
AT5G57380.1	Thale cress	nucleus	34.49	32.1
AT2G18880.1	Thale cress	nucleus	29.29	31.95
GSMUA_Achr4P01640_001	Banana	nucleus	34.66	31.1
AT4G30200.2	Thale cress	nucleus	38.47	31.09
TraesCS7A01G433000.1	Wheat	cytosol	44.02	31.05
HORVU7Hr1G099250.1	Barley	cytosol	43.5	30.99
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	43.85	30.85
CDY42262	Canola	nucleus	29.46	30.2
PGSC0003DMT400019884	Potato	cytosol	19.24	30.08
Bra020445.1-P	Field mustard	nucleus	29.12	30.05
CDY11872	Canola	mitochondrion	29.64	30.05
CDY47942	Canola	nucleus	29.12	29.84
CDX88618	Canola	mitochondrion	29.98	29.73
GSMUA_Achr10P...	Banana	extracellular	10.05	24.37

Protein Annotations

EnsemblPlants:GSMUA_Achr5P16400_001	EnsemblPlants:GSMUA_Achr5T16400_001	EnsemblPlantsGene:GSMUA_Achr5G16400_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:FN3_dom	InterPro:FN3_sf	InterPro:IPR003961	InterPro:Oberon_PHD	PANTHER:PTHR21736	PANTHER:PTHR21736:SF24
PFAM:PF07227	PFscan:PS50853	SEG:seg	SUPFAM:SSF49265	UniParc:UPI0002956F93	UniProt:M0SZ19
MapMan:12.3.3.1.2.2	:	:	:	:	:

Description

Putative Protein VERNALIZATION INSENSITIVE 3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G16400_001]

Coordinates

chr5:+:14887969..14892783

Molecular Weight (calculated)

63828.8 Da

IEP (calculated)

5.823

GRAVY (calculated)

-0.324

Length

577 amino acids

Sequence
(BLAST)

001: MIEYLFKLVS EKKSGGHNEN PSRLPITANN LPASEGNEAV INVRYCQNLA CRATLNLDDA FCKRCSCCIC HKYDDNKDPS LWLFCSSDTL SQGNPCGLSC
101: HLECALKHER AGIVKNGKCT SLDGSYYCTY CGKSNDLLGC WKKQLMIAMD ARRVDVLCYR ISLSHKILES TEKFQSLHEI VDTAMKKLEA EVGPINDLPN
201: MARGIVNRLS VGAEVQRMCA FAVKLLDSMH LVAFSSDTQV QQVSLTSSSF IKFVDISPVS VTLVLGYDDN SALSQEMAGF TIWHRKADAR EYPKKPTCTL
301: FKPKRRFLIT ELSPATEYMF KVVAFSSFSE LGMWEVGVTT EGISLDDPAG LAADVNPSKP YCQSPKTNSS GLSNPSEGDE SNNNVVAYTD LNKSPDNEKS
401: EYAGTISGAE DSTNSVENNQ ATDIPKSENE SNAPTADEMV IVPFGHPDQT LPVTHRGLDT SQEGPGRASL SKKRGREKIL EMCAKEGSLE GSYEYCVKVV
501: RWLECEGHIE TNFRVKFLTW FSLRATPQER RIVTVYVDTL IDDPASLAGQ LVDTFSETIC SKKPPLVPTG FCMKLWH

Best Arabidopsis Sequence Match ( AT4G30200.1 )
(BLAST)

001: MSVDEKRQLV YELSKQSHLA AEVLQAWSRQ EILQILCAEM GKERKYTGLT KVKIIETLLK IVSEKNSGEC EGKKRDSDCL PIQRNTKRQR KVDNPSRYVI
101: PATNIVTSNN ASGSCSSVNT KGESTTIYCK NLACRAVLRQ EDSFCRRCSC CICRKYDDNK DPSLWLTCSS DPPFEGESCG FSCHLECAFN TEKSGLGKDK
201: QSEGCCFYCV SCGKANSLLE CWKKQLTIAK ETRRVEVLCY RLFLVQKLLK SSTKYRNLCE VVDEAVKTLE ADVGPLTGLP MKMGRGIVNR LHSGPDVQKL
301: CSSALESLET IATTPPDVAA LPSPRSSKMQ QDTATTGSTK IRFEDVNATS LTVVLASNEI PSPPNIVHYS IWHRKVPEKD YPEKSTCTLF IPNTRFVVSG
401: LAPASEYCFK VVSYSGTREM GVDEINVLTR SAEEGANCSS AVERSVSPLT NCSTLSSNPS SVEAESNNDY IVPKKPSSKN EDNNSPSVDE SAAKRMKRTT
501: DSDIVQIEKD VEQIVLLDDE EQEAVLDKTE SETPVVVTTK SLVGNRNSSD ASLPITPFRS DEIKNRQARI EISMKDNCNN GDHSANGGTE SGLEHCVKII
601: RQLECSGHID KNFRQKFLTW YSLRATSQEI RVVKIFIDTF IDDPMALAEQ LIDTFDDRVS IKRSAVGGSG ASAVVPSGFC MKLWH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.