Factsheet for Bra024456.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29247	Canola	cytosol, nucleus, plastid	88.17	96.2
CDY59604	Canola	nucleus	84.69	90.12
AT2G18880.1	Thale cress	nucleus	50.12	40.83
Bra010297.1-P	Field mustard	nucleus	59.16	39.84
Bra011173.1-P	Field mustard	nucleus	58.7	39.53
Bra024097.1-P	Field mustard	cytosol	54.99	37.09
Bra006824.1-P	Field mustard	nucleus	36.89	32.58
Bra020445.1-P	Field mustard	nucleus	40.84	31.48
VIT_11s0052g00830.t01	Wine grape	nucleus	52.2	30.49
KRH02856	Soybean	nucleus	50.35	29.44
KRH19033	Soybean	nucleus	49.65	29.08
GSMUA_Achr3P05080_001	Banana	cytosol	42.69	28.75
GSMUA_Achr9P13690_001	Banana	plasma membrane	43.62	28.31
Solyc07g018270.2.1	Tomato	cytosol	47.56	27.74
Bra015040.1-P	Field mustard	cytosol	21.81	27.73
GSMUA_Achr4P02170_001	Banana	cytosol	42.23	27.7
GSMUA_Achr5P16400_001	Banana	cytosol	36.66	27.38
Bra015039.1-P	Field mustard	nucleus	33.87	24.54
Os02t0152500-01	Rice	nucleus	42.0	24.17
KXG29488	Sorghum	nucleus	40.84	23.13
Zm00001d053875_P001	Maize	cytosol, plastid	40.6	23.03
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	39.68	22.77
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	42.92	22.56
TraesCS6A01G123400.1	Wheat	nucleus	39.21	22.53
HORVU7Hr1G099250.1	Barley	cytosol	42.23	22.47
TraesCS6D01G113600.1	Wheat	nucleus	38.98	22.4
TraesCS7A01G433000.1	Wheat	cytosol	42.46	22.37
TraesCS6B01G151600.2	Wheat	nucleus	38.75	22.27
Zm00001d015293_P015	Maize	nucleus, plastid	41.3	21.07
PGSC0003DMT400019884	Potato	cytosol	12.3	14.36

Protein Annotations

EnsemblPlants:Bra024456.1	EnsemblPlants:Bra024456.1-P	EnsemblPlantsGene:Bra024456	GO:GO:0006950	GO:GO:0008150	GO:GO:0009409
GO:GO:0009628	GO:GO:0009987	GO:GO:0070417	InterPro:Oberon_PHD	PANTHER:PTHR21736	PANTHER:PTHR21736:SF13
PFAM:PF07227	SEG:seg	UniParc:UPI000253EF23	UniProt:M4E6Q2	MapMan:12.3.3.1.2.2	:

Description

AT4G30200 (E=2e-094) VEL1 | Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.

Coordinates

chrA06:-:15892038..15893404

Molecular Weight (calculated)

47910.1 Da

IEP (calculated)

7.961

GRAVY (calculated)

-0.508

Length

431 amino acids

Sequence
(BLAST)

001: MSVDEKRKLV HELSKDSDLA FEALQVWTHE EIRQVLCAEL GKERKYKNLT KAQLINSLLK TVSEKKAPTP IKGNSGGDQE DRKRDSSTTT TKTTKRNSKR
101: QRKNATPTRY VSAESVNKAK GGIYCKNLAC QAMLRQEDLF CQRCSCCVCH KYDDNKDPSL WLTCGSDPPF PGDSCGLSCH LDCAFKNEKS GLKPSSDVDG
201: CFYCVSCGKT NSLLECWKKQ LLIAKETRSV DVLCNRLVLA QKLLKGTEKY IKLSETVEEA VMSLETELCG GPLTDLPSAM CRGNVNRLGS ASKVKDLCSS
301: ALKSLQDTPE CCFKVVSLRG GKQSSVDETK VSTRTLQEEE EETVSEKVVN GKSSTSCGFG LEDCVKIMRQ LECSGYVDKS FRQEFLTWYS LRASAQEMNV
401: VKTFIDAFGD DSVALAEQLV DTFSDCISRK R

Best Arabidopsis Sequence Match ( AT4G30200.1 )
(BLAST)

001: MSVDEKRQLV YELSKQSHLA AEVLQAWSRQ EILQILCAEM GKERKYTGLT KVKIIETLLK IVSEKNSGEC EGKKRDSDCL PIQRNTKRQR KVDNPSRYVI
101: PATNIVTSNN ASGSCSSVNT KGESTTIYCK NLACRAVLRQ EDSFCRRCSC CICRKYDDNK DPSLWLTCSS DPPFEGESCG FSCHLECAFN TEKSGLGKDK
201: QSEGCCFYCV SCGKANSLLE CWKKQLTIAK ETRRVEVLCY RLFLVQKLLK SSTKYRNLCE VVDEAVKTLE ADVGPLTGLP MKMGRGIVNR LHSGPDVQKL
301: CSSALESLET IATTPPDVAA LPSPRSSKMQ QDTATTGSTK IRFEDVNATS LTVVLASNEI PSPPNIVHYS IWHRKVPEKD YPEKSTCTLF IPNTRFVVSG
401: LAPASEYCFK VVSYSGTREM GVDEINVLTR SAEEGANCSS AVERSVSPLT NCSTLSSNPS SVEAESNNDY IVPKKPSSKN EDNNSPSVDE SAAKRMKRTT
501: DSDIVQIEKD VEQIVLLDDE EQEAVLDKTE SETPVVVTTK SLVGNRNSSD ASLPITPFRS DEIKNRQARI EISMKDNCNN GDHSANGGTE SGLEHCVKII
601: RQLECSGHID KNFRQKFLTW YSLRATSQEI RVVKIFIDTF IDDPMALAEQ LIDTFDDRVS IKRSAVGGSG ASAVVPSGFC MKLWH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.