Factsheet for TraesCS6A01G123400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G113600.1	Wheat	nucleus	98.53	98.53
TraesCS6B01G151600.2	Wheat	nucleus	98.53	98.53
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	91.47	91.34
Os02t0152500-01	Rice	nucleus	67.6	67.69
KXG29488	Sorghum	nucleus	62.8	61.89
Zm00001d053875_P001	Maize	cytosol, plastid	60.53	59.74
Zm00001d015293_P015	Maize	nucleus, plastid	60.27	53.49
GSMUA_Achr4P02170_001	Banana	cytosol	42.67	48.71
GSMUA_Achr3P05080_001	Banana	cytosol	41.07	48.12
GSMUA_Achr5P16400_001	Banana	cytosol	35.73	46.45
GSMUA_Achr9P13690_001	Banana	plasma membrane	38.93	43.98
CDY29247	Canola	cytosol, nucleus, plastid	22.0	41.77
CDY14184	Canola	cytosol	27.73	40.86
CDY59604	Canola	nucleus	21.73	40.25
CDY51654	Canola	cytosol	28.27	39.48
Bra024456.1-P	Field mustard	nucleus	22.53	39.21
TraesCS7A01G433000.1	Wheat	cytosol	42.0	38.51
CDX72220	Canola	nucleus	31.07	37.28
VIT_11s0052g00830.t01	Wine grape	nucleus	36.53	37.13
CDX68633	Canola	nucleus	30.4	36.72
CDY03544	Canola	nucleus	30.4	36.54
Bra010297.1-P	Field mustard	nucleus	30.67	35.94
KRH19033	Soybean	nucleus	35.2	35.87
KRH02856	Soybean	nucleus	35.2	35.82
Bra011173.1-P	Field mustard	nucleus	30.53	35.78
Bra024097.1-P	Field mustard	cytosol	30.4	35.68
Solyc07g018270.2.1	Tomato	cytosol	35.07	35.59
CDY28168	Canola	nucleus	30.13	35.31
AT4G30200.2	Thale cress	nucleus	32.67	34.31
Bra006824.1-P	Field mustard	nucleus	21.73	33.4
AT2G18880.1	Thale cress	nucleus	23.33	33.08
CDY11872	Canola	mitochondrion	24.4	32.16
AT5G57380.1	Thale cress	nucleus	26.53	32.1
CDY42262	Canola	nucleus	24.0	31.97
Bra020445.1-P	Field mustard	nucleus	23.73	31.84
CDY47942	Canola	nucleus	23.73	31.62
CDX88618	Canola	mitochondrion	24.4	31.44
TraesCS1A01G108900.1	Wheat	cytosol	23.6	29.3
PGSC0003DMT400019884	Potato	cytosol	14.4	29.27
TraesCS5A01G097100.1	Wheat	nucleus	25.2	27.12

Protein Annotations

EnsemblPlants:TraesCS6A01G123400.1	EnsemblPlantsGene:TraesCS6A01G123400	Gene3D:2.60.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:FN3_dom	InterPro:FN3_sf	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Oberon_PHD
PANTHER:PTHR21736	PANTHER:PTHR21736:SF24	PFAM:PF07227	PFscan:PS50853	SUPFAM:SSF49265	TIGR:cd00063
TIGR:cd15521	MapMan:12.3.3.1.2.2	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:96985186..96989666

Molecular Weight (calculated)

83156.5 Da

IEP (calculated)

7.811

GRAVY (calculated)

-0.503

Length

750 amino acids

Sequence
(BLAST)

001: MDPPYAGAII EPAKCRLMSV DEKKDLVREL SKRPQTAPDK LQSWSRRDIV EILCADLGRE RKYTGLSKQR MLDYLFRVVT GKSSGPVVHV QEKEPTLDPN
101: ASNHQYPAKR QRKSDNPSRL PIAVNNPQTA VVPVQINNVR SCRNIACRAI LSMEDKFCRR CSCCICFKYD DNKDPTIWLS CSSDHPMQKD SCGLSCHLEC
201: ALKDGRTGIL PSGQCKKLDG AYYCPNCRKQ HDLLRSWKKQ LMLAKEARRL DILCYRIFLG HKVLFSTEKY SVLHKFVDIA KQKLEAEVGS VAGHGSMGRG
301: IVSRLTCGAE VQKLCAEALD VMQSKFPVES PTNSQFERSN MMPSSFIKFE PITPTSITVV FDLARCPYIS QGVTGFKVWH QVDGTGFYSL NPTGTVHLMS
401: KTFVVTELKP ATCYVIKVTA FSNSSEFAPW EARVSTSSLK ESDLKGLAPG GAGLVDQNNR SPKTNSGGQS DRSSEGVDSN NNATVYTDLN KSPESDFEYC
501: ENPEILDSDK VPHHPNGPSN NLQNMQIVAA RVPEVTELEE APGLSASALD EEPNSTVQAA LLRESSNSME QNQRSEVPIS QDASNATAGV ELALVPRFVG
601: SMPPTAPRVM ETGKETGGRS FNTKPSDNIF QNGSSKPDRE PGNSSNKRSG KFEDAGHKDG CPEATYEYCV RVVRWLETEG YIETNFRVKF LTWYSLRATP
701: HDRKIVSVYV DTLINDPASL CGQLTDTFSE AIYSKKPPSV PSGFCMNLWH

Best Arabidopsis Sequence Match ( AT5G57380.2 )
(BLAST)

001: MDSSSFEDNE CIETCKPNVL NVSERRELIH ALSNQPEEAS ELLNSWSRNE IMKIICAEMG KERKYTGLNK PKLIENLLNL VSRPLGETSC SDRRNSRKKE
101: KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC AYCGKDNDLL GCWRKQVKVA
201: KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD KVVSPSESVS GQGDKMTVRV
301: EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD ESELRFTTLK DDGDEAGDQQ
401: SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG KQGGNKRFKS RTVSLNEKPE
501: INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL SKRSSTNGVV PAGICLKLWH

Arabidopsis Description

VIN3VIN3 [Source:UniProtKB/TrEMBL;Acc:A0A178UF19]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.