Factsheet for Solyc07g018270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019884	Potato	cytosol	45.33	90.79
VIT_11s0052g00830.t01	Wine grape	nucleus	60.89	60.98
KRH02856	Soybean	nucleus	56.02	56.17
KRH19033	Soybean	nucleus	55.62	55.84
CDY14184	Canola	cytosol	38.43	55.8
CDY51654	Canola	cytosol	38.57	53.07
CDY28168	Canola	nucleus	42.76	49.38
CDX68633	Canola	nucleus	41.41	49.28
CDY29247	Canola	cytosol, nucleus, plastid	26.25	49.11
CDX72220	Canola	nucleus	41.41	48.96
Bra011173.1-P	Field mustard	nucleus	42.22	48.75
CDY03544	Canola	nucleus	41.0	48.56
AT4G30200.2	Thale cress	nucleus	46.14	47.76
CDY59604	Canola	nucleus	26.12	47.65
Bra024456.1-P	Field mustard	nucleus	27.74	47.56
Bra010297.1-P	Field mustard	nucleus	41.0	47.34
Bra024097.1-P	Field mustard	cytosol	40.6	46.95
Bra006824.1-P	Field mustard	nucleus	28.69	43.44
GSMUA_Achr3P05080_001	Banana	cytosol	37.35	43.12
AT5G57380.1	Thale cress	nucleus	35.86	42.74
Bra020445.1-P	Field mustard	nucleus	31.93	42.22
CDY11872	Canola	mitochondrion	32.48	42.18
CDY47942	Canola	nucleus	32.07	42.1
GSMUA_Achr4P02170_001	Banana	cytosol	37.21	41.86
CDY42262	Canola	nucleus	31.8	41.74
GSMUA_Achr9P13690_001	Banana	plasma membrane	37.35	41.57
GSMUA_Achr5P16400_001	Banana	cytosol	32.34	41.42
CDX88618	Canola	mitochondrion	32.34	41.07
AT2G18880.1	Thale cress	nucleus	27.47	38.37
Os02t0152500-01	Rice	nucleus	37.48	36.98
Solyc04g076400.2.1	Tomato	cytosol	30.04	36.39
KXG29488	Sorghum	nucleus	36.13	35.09
TraesCS6A01G123400.1	Wheat	nucleus	35.59	35.07
TraesCS6D01G113600.1	Wheat	nucleus	35.59	35.07
TraesCS6B01G151600.2	Wheat	nucleus	35.45	34.93
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	34.91	34.35
Zm00001d053875_P001	Maize	cytosol, plastid	35.32	34.34
Solyc05g018390.2.1	Tomato	nucleus	29.5	33.69
Zm00001d015293_P015	Maize	nucleus, plastid	35.59	31.12
HORVU7Hr1G099250.1	Barley	cytosol	32.88	30.0
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	32.75	29.51
TraesCS7A01G433000.1	Wheat	cytosol	32.07	28.97

Protein Annotations

EMBL:JQ669017	EnsemblPlants:Solyc07g018270.2.1	EnsemblPlantsGene:Solyc07g018270.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:FN3_dom	InterPro:IPR003961	InterPro:Oberon_PHD	PANTHER:PTHR21736	PANTHER:PTHR21736:SF13	PFAM:PF07227
SEG:seg	UniParc:UPI0002575435	UniProt:H9E8V0	MapMan:12.3.3.1.2.2	:	:

Description

Vernalization insensitive 3 [Source:UniProtKB/TrEMBL;Acc:H9E8V0]

Coordinates

chr7:+:9970191..9981371

Molecular Weight (calculated)

81544.5 Da

IEP (calculated)

5.087

GRAVY (calculated)

-0.392

Length

739 amino acids

Sequence
(BLAST)

001: MDFSSFEGIA LDPSKCSKLS MEEKRELVYE LSKQSHGAPE MLQSWSRQEI LQILCAEMGK ERKYTGLTKL KIIENLLKIV SEKKSLEQEN TSNLEMQPSS
101: ESGQRSSKRQ RKAEHPSRFP IEANTSSTTN TNVSLANVVY CKNLACRAKL SGQDAFCKRC SCCICRNYDD NKDPSLWLIC SSEPPFQGDS CGMSCHLECA
201: MKHGKSCITT DKSDKGNNGT FYCVSCGKAN DLLSSLKKQL IVARDTRRVD ILCYRLSLSQ KLSFGAENCP KLYEVLDEAV NKLEADVGPL TGLPVKMARG
301: IVNRLSFGPA VQQLCGLAVE YIDALLSERV SEMPSNAKVK DCEVIESKLV RFEDVFPSSV TVVLSSEGSS MENVVGYSLW HRKAVETEYP VEPTRTLFSP
401: NTRFVLSDLM PATDYVLKIV SLDSKKELGM FEVQFCSSKA ENELSNLNMK SLEVERSQSP PTNCSNLSNP SSVEDETNNI VLCSNEAENR GDNCLSCCDN
501: TDKAISTDLC CTTVAFASKS HIGNEEVMVS LGDEEDSIVK VTSLPNTDAI NLENKQCSDV QTTEETSTDN GSNAPLQTAL EFAPFVGSVD AGLPITPCKM
601: ENVKGSLGRK GKSEHCSKDL DNGSGKEDGP QVGCSSKKRV GEWHEECAGT GDKDFEYYVK VVRWLECGEH IDKTFRQKFL TWYSLRATPQ DVRIVKAFVD
701: TLIEDPASLA GQLVDTFSDV ISSKRASVVP AGFCLKLWH

Best Arabidopsis Sequence Match ( AT4G30200.3 )
(BLAST)

001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDT ATTGSTKIRF EDVNATSLTV VLASNEIPSP PNIVHYSIWH RKVPEKDYPE
401: KSTCTLFIPN TRFVVSGLAP ASEYCFKVVS YSGTREMGVD EINVLTRSAE EGANCSSAVE RSVSPLTNCS TLSSNPSSVE AESNNDYIVP KKPSSKNEDN
501: NSPSVDESAA KRMKRTTDSD IVQIEKDVEQ IVLLDDEEQE AVLDKTESET PVVVTTKSLV GNRNSSDASL PITPFRSDEI KNRQARIEIS MKDNCNNGDH
601: SANGGTESGL EHCVKIIRQL ECSGHIDKNF RQKFLTWYSL RATSQEIRVV KIFIDTFIDD PMALAEQLID TFDDRVSIKR SAVGGSGASA VVPSGFCMKL
701: WH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.