Factsheet for TraesCS6D01G113600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G123400.1	Wheat	nucleus	98.53	98.53
TraesCS6B01G151600.2	Wheat	nucleus	98.4	98.4
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	91.2	91.08
Os02t0152500-01	Rice	nucleus	68.27	68.36
KXG29488	Sorghum	nucleus	63.2	62.29
Zm00001d053875_P001	Maize	cytosol, plastid	60.93	60.13
Zm00001d015293_P015	Maize	nucleus, plastid	60.53	53.73
GSMUA_Achr4P02170_001	Banana	cytosol	43.47	49.62
GSMUA_Achr3P05080_001	Banana	cytosol	41.6	48.75
GSMUA_Achr5P16400_001	Banana	cytosol	36.27	47.14
GSMUA_Achr9P13690_001	Banana	plasma membrane	39.6	44.73
CDY29247	Canola	cytosol, nucleus, plastid	21.87	41.52
CDY14184	Canola	cytosol	27.6	40.67
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	43.87	40.12
CDY59604	Canola	nucleus	21.6	40.0
CDY51654	Canola	cytosol	28.13	39.29
Bra024456.1-P	Field mustard	nucleus	22.4	38.98
CDX72220	Canola	nucleus	30.93	37.12
CDX68633	Canola	nucleus	30.67	37.04
VIT_11s0052g00830.t01	Wine grape	nucleus	36.27	36.86
CDY03544	Canola	nucleus	30.27	36.38
KRH19033	Soybean	nucleus	35.6	36.28
KRH02856	Soybean	nucleus	35.6	36.23
Bra011173.1-P	Field mustard	nucleus	30.8	36.09
Bra010297.1-P	Field mustard	nucleus	30.53	35.78
CDY28168	Canola	nucleus	30.4	35.62
Solyc07g018270.2.1	Tomato	cytosol	35.07	35.59
Bra024097.1-P	Field mustard	cytosol	30.27	35.52
AT4G30200.2	Thale cress	nucleus	32.67	34.31
Bra006824.1-P	Field mustard	nucleus	21.73	33.4
AT2G18880.1	Thale cress	nucleus	23.2	32.89
CDY11872	Canola	mitochondrion	24.4	32.16
CDY42262	Canola	nucleus	24.0	31.97
AT5G57380.1	Thale cress	nucleus	26.4	31.94
Bra020445.1-P	Field mustard	nucleus	23.73	31.84
CDY47942	Canola	nucleus	23.73	31.62
CDX88618	Canola	mitochondrion	24.4	31.44
TraesCS1D01G090400.1	Wheat	cytosol	23.87	29.11
PGSC0003DMT400019884	Potato	cytosol	14.27	29.0
TraesCS5D01G109600.1	Wheat	nucleus	25.73	27.69

Protein Annotations

EnsemblPlants:TraesCS6D01G113600.1	EnsemblPlantsGene:TraesCS6D01G113600	Gene3D:2.60.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:FN3_dom	InterPro:FN3_sf	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Oberon_PHD
PANTHER:PTHR21736	PANTHER:PTHR21736:SF24	PFAM:PF07227	PFscan:PS50853	SUPFAM:SSF49265	TIGR:cd00063
TIGR:cd15521	MapMan:12.3.3.1.2.2	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:80521039..80525379

Molecular Weight (calculated)

83176.5 Da

IEP (calculated)

7.595

GRAVY (calculated)

-0.510

Length

750 amino acids

Sequence
(BLAST)

001: MDPPYAGAII EPAKCRLMSV DEKKDLVREL SKRPQTAPDK LQSWSRRDIV EILCADLGRE RKYTGLSKQR MLDYLFRVVT GKSSGPVVHV QEKEPTVDPN
101: ASNHQYPAKR QRKSDNPSRL PIAVSNPQTA VVPVQINNVR SCRNIACRAI LSMEDKFCRR CSCCICFKYD DNKDPTIWLS CSSDHPMQKD SCGLSCHLEC
201: ALKDGRTGIL PSGQCKKLDG AYYCPNCRKQ HDLLRSWKKQ LMLAKDARRL DILCYRIFLG HKVLFSTEKY SVLHKFVDTA KQKLEAEVGS VAGYGNMGRG
301: IVSRLTCGAE VQKLCAEALD VMESKFPVES PTNSQFERSN MMPSSFIKFE PITPTSITVV LDLARCPYIS QGVTGFKVWH QVDGTGFYSF NPTGTVHLMS
401: KTFVVTELKP ATCYMIKVTA FSNSSEFAPW EARVSTSSLK ESDLKGLAPG GAGLVDQNNR SPKTNSGGQS DRSSEGVDSN NNATVYTDLN KSPESDFEYC
501: ENPEILDSDK VPHHPNGPSN NLQNMQIVAA RVPEVTELEE APGLSASALD EEPNSTVQAA LLRESSNSME QNQRSEVPIS QDASNATAGV ELALVPRFVG
601: SMPPTAPRVM ETGKETGGRS FNTKPSDNIF QNGSSKPDRE PGDSSNKRSG KFEDAGHKDG CPEATYEYCV RVVRWLETEG YIETNFRVKF LTWYSLRATP
701: HDRKIVSVYV DTLINDPASL CGQLTDTFSE AIYSKKPPSV PSGFCMNLWH

Best Arabidopsis Sequence Match ( AT4G30200.3 )
(BLAST)

001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDT ATTGSTKIRF EDVNATSLTV VLASNEIPSP PNIVHYSIWH RKVPEKDYPE
401: KSTCTLFIPN TRFVVSGLAP ASEYCFKVVS YSGTREMGVD EINVLTRSAE EGANCSSAVE RSVSPLTNCS TLSSNPSSVE AESNNDYIVP KKPSSKNEDN
501: NSPSVDESAA KRMKRTTDSD IVQIEKDVEQ IVLLDDEEQE AVLDKTESET PVVVTTKSLV GNRNSSDASL PITPFRSDEI KNRQARIEIS MKDNCNNGDH
601: SANGGTESGL EHCVKIIRQL ECSGHIDKNF RQKFLTWYSL RATSQEIRVV KIFIDTFIDD PMALAEQLID TFDDRVSIKR SAVGGSGASA VVPSGFCMKL
701: WH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.