CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03544	Canola	nucleus	89.78	73.24
CDY51654	Canola	cytosol	74.07	70.2
CDX68633	Canola	nucleus	78.0	63.93
CDY28168	Canola	nucleus	78.0	62.03
CDX72220	Canola	nucleus	74.66	60.8
CDY29247	Canola	cytosol, nucleus, plastid	44.79	57.72
AT4G30200.2	Thale cress	nucleus	78.39	55.88
CDY59604	Canola	nucleus	44.4	55.8
VIT_11s0052g00830.t01	Wine grape	nucleus	57.76	39.84
KRH02856	Soybean	nucleus	57.56	39.76
KRH19033	Soybean	nucleus	57.17	39.54
Solyc07g018270.2.1	Tomato	cytosol	55.8	38.43
CDY47942	Canola	nucleus	42.24	38.19
CDY42262	Canola	nucleus	41.26	37.3
GSMUA_Achr3P05080_001	Banana	cytosol	45.78	36.41
CDY11872	Canola	mitochondrion	40.27	36.03
GSMUA_Achr9P13690_001	Banana	plasma membrane	46.56	35.69
CDX88618	Canola	mitochondrion	39.88	34.88
GSMUA_Achr4P02170_001	Banana	cytosol	44.99	34.86
GSMUA_Achr5P16400_001	Banana	cytosol	39.1	34.49
CDX77426	Canola	cytosol	20.83	31.27
Os02t0152500-01	Rice	nucleus	43.03	29.24
Zm00001d053875_P001	Maize	cytosol, plastid	42.44	28.42
KXG29488	Sorghum	nucleus	42.44	28.38
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	41.06	27.83
TraesCS6A01G123400.1	Wheat	nucleus	40.86	27.73
TraesCS6B01G151600.2	Wheat	nucleus	40.86	27.73
TraesCS6D01G113600.1	Wheat	nucleus	40.67	27.6
CDX77427	Canola	nucleus	31.83	27.23
PGSC0003DMT400019884	Potato	cytosol	19.06	26.29
Zm00001d015293_P015	Maize	nucleus, plastid	42.63	25.68
HORVU7Hr1G099250.1	Barley	cytosol	40.67	25.56
CDY39555	Canola	nucleus	32.42	25.5
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	41.06	25.49
TraesCS7A01G433000.1	Wheat	cytosol	40.47	25.18

Protein Annotations

MapMan:12.3.3.1.2.2	Gene3D:2.60.40.10	UniProt:A0A078FMT5	EnsemblPlants:CDY14184	ProteinID:CDY14184	ProteinID:CDY14184.1
InterPro:FN3_dom	InterPro:FN3_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00078741001
InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Oberon_PHD	PFAM:PF00041	PFAM:PF07227
PFscan:PS50853	PANTHER:PTHR21736	PANTHER:PTHR21736:SF13	SMART:SM00060	SUPFAM:SSF49265	UniParc:UPI0004EE312A

Description

BnaA08g13150DBnaA08g13150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMT5]

Coordinates

chrLK032041:+:14670..17419

Molecular Weight (calculated)

56842.1 Da

IEP (calculated)

8.179

GRAVY (calculated)

-0.379

Length

509 amino acids

Sequence
(BLAST)

001: MSVEEKRQLV YELSKQSSHL APEVLQAWSR QEILQILCAE MGKERKYTGL TKVKIIETLM KIVSEKNAGE CDENKKKRDS DCCLPVQRSA KRPRKKTTYC
101: KNLACRAVMR QEDAFCRRCS CCICRKYDEN KDPSLWLTCS SDPPFEGGSC GSSCHLECAF ESEKSGLAKR SEECCFYCVS CGKPNSLLEC WKKQLTIAKE
201: ARRVDILCYR LLLVQKLVKG SSKYRNVCEA VEKAVKCLEA DVGPLTMKMG RGIVNRLNSG PDVQKLCSSA LESLQTLETK PPEISADTAT TVPPTKIRFE
301: DVNATSLTVI LASNEVDSPA NIVHYSIWHR KVTEKEYQEK STCTLFTPNA RFVVSGLAPA SEYCFKVVSF SGTRELGVDV INVVTRSPEE RSESPLTNCN
401: NGNNGDHHSA NGGAESGLEH CVKIIRQLEC SGHIEKDFRQ KFLTWYSLRA TPQESRVVKI FIDTFTDDPV ALAEQLVHTF SDRVSVKRSA IGGGASAVVQ
501: SGFCMKLWH

Best Arabidopsis Sequence Match ( AT2G18880.1 )
(BLAST)

001: MASFHKGAAG DSMGSSKMSF DQRRQLVLKL SKESEREFKE VLKDWSCNEI RELLRAESKK DIKYTGLTKD EIITRLFNIV SKKNTRDHEV EEIIPSPKRQ
101: KRDLVTPLAK AKGKGKMYCQ NLACQNKLRE EATFCKRCSC CICFKYDDNK DPSLWLTCNS DSQFDGESCG LSCHLNCAFD SEKSGLKEDT PSSDIDGCFN
201: CVSCGKTNSK IECLKKQLII ANEERRVGVF CYRILLAHKL LKGTKKYIIV SEEVEKAVMH LKNEFGVPIS CLPSKMSRGL VNRLCCAEKV KKHCSSALKE
301: LDGLPLPSTI QGSMKIRIES VLATSVTFDI EAEESFSWGD TNHYRMVYRK VSEKHSSKDL TRELFSTSSH QRFTVMELTP ATEYWFKIVS FSGVEELSVD
401: EFIVSTKTLQ DEEVAAVLLN MSNCNNANKM EKSGSCSFGF EECVNLIRQL ECSGQVKSDF RKKFLTWYCL KATDKEKHVV EIFVDTFKDD KEALAKQLID
501: TFSDCITRKH PEIGGGSESA GVSLILLQD

Arabidopsis Description

VIL3VIN3-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5BPT4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.