CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19033	Soybean	nucleus	94.17	94.29
VIT_11s0052g00830.t01	Wine grape	nucleus	63.64	63.55
CDY14184	Canola	cytosol	39.76	57.56
Solyc07g018270.2.1	Tomato	cytosol	56.17	56.02
CDY51654	Canola	cytosol	40.03	54.93
CDY29247	Canola	cytosol, nucleus, plastid	27.95	52.15
CDY03544	Canola	nucleus	43.28	51.12
Bra010297.1-P	Field mustard	nucleus	44.1	50.78
CDY59604	Canola	nucleus	27.82	50.62
CDX72220	Canola	nucleus	42.88	50.56
Bra024456.1-P	Field mustard	nucleus	29.44	50.35
CDX68633	Canola	nucleus	41.66	49.44
AT4G30200.2	Thale cress	nucleus	47.63	49.16
Bra024097.1-P	Field mustard	cytosol	42.33	48.83
PGSC0003DMT400019884	Potato	cytosol	24.42	48.78
CDY28168	Canola	nucleus	41.93	48.28
Bra011173.1-P	Field mustard	nucleus	41.93	48.28
GSMUA_Achr3P05080_001	Banana	cytosol	39.89	45.94
Bra006824.1-P	Field mustard	nucleus	30.12	45.49
Bra020445.1-P	Field mustard	nucleus	34.19	45.08
GSMUA_Achr4P02170_001	Banana	cytosol	40.03	44.9
GSMUA_Achr9P13690_001	Banana	plasma membrane	40.43	44.88
CDY47942	Canola	nucleus	34.06	44.58
AT5G57380.1	Thale cress	nucleus	37.31	44.35
CDY42262	Canola	nucleus	33.79	44.23
GSMUA_Achr5P16400_001	Banana	cytosol	34.6	44.19
CDY11872	Canola	mitochondrion	33.24	43.06
CDX88618	Canola	mitochondrion	33.51	42.44
KRH72469	Soybean	nucleus	33.24	40.23
KRH16856	Soybean	nucleus	34.06	40.03
AT2G18880.1	Thale cress	nucleus	28.22	39.32
Os02t0152500-01	Rice	nucleus	38.94	38.32
KRH41601	Soybean	nucleus, plastid	31.89	36.04
KXG29488	Sorghum	nucleus	36.91	35.74
Zm00001d053875_P001	Maize	cytosol, plastid	36.77	35.66
TraesCS6D01G113600.1	Wheat	nucleus	36.23	35.6
TraesCS6B01G151600.2	Wheat	nucleus	35.96	35.33
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	35.96	35.29
TraesCS6A01G123400.1	Wheat	nucleus	35.82	35.2
KRH39246	Soybean	nucleus, plastid	30.12	34.1
KRH48444	Soybean	nucleus	32.84	33.66
Zm00001d015293_P015	Maize	nucleus, plastid	37.99	33.14
KRH60306	Soybean	nucleus	31.75	32.45
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	34.87	31.34
HORVU7Hr1G099250.1	Barley	cytosol	34.19	31.11
TraesCS7A01G433000.1	Wheat	cytosol	34.46	31.05

Protein Annotations

EntrezGene:100794721	MapMan:12.3.3.1.2.2	Gene3D:2.60.40.10	EMBL:ACUP02010328	InterPro:FN3_dom	InterPro:FN3_sf
EnsemblPlantsGene:GLYMA_17G062500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1MSQ1	InterPro:IPR003961
InterPro:IPR013783	InterPro:Ig-like_fold	EnsemblPlants:KRH02856	ProteinID:KRH02856	ProteinID:KRH02856.1	InterPro:Oberon_PHD
PFAM:PF00041	PFAM:PF07227	PFscan:PS50853	PANTHER:PTHR21736	PANTHER:PTHR21736:SF13	SMART:SM00060
SUPFAM:SSF49265	UniParc:UPI000233E663	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:4787552..4792689

Molecular Weight (calculated)

80919.1 Da

IEP (calculated)

5.814

GRAVY (calculated)

-0.567

Length

737 amino acids

Sequence
(BLAST)

001: MATDSSFEGL ALDPSKCSKL SMEEKRELVY EVSKWSHGAS EMLQSWSRQE ILQILCAEMG KERKYTGLTK LKIIENLLKI VSEKKSGGNE TATDPEPQSS
101: PAPGQKPAKR QRKSENPSHV PVPATSITVN NGGDSVNTAY CKNSACKATL NQSYAFCKRC SCCICHQYDD NKDPSLWLIC SSENPFPGVS CGLSCHLECA
201: LKHDGSGIAK DGEHPKLDGG FYCVSCGKVN DLLGCWRKQL MVAKDTRRVD ILCYRVSLSQ RLLQGTEVYE ELYKIVDEAV KKLEPEVGPL IGSPVKIGRG
301: IVNRLSSGPE VQKLCGFALE SLDSLLSKRI LPSSPKPTTQ DAHLLAPNMV RFEDVTATTL TIILGSEEPS GEIIAGYTLW HRKVDDVDYP TDPTCTSLLP
401: NRRFRVSGLI PGTEYSFKVV SNDLRESGMC EVQVSTEHGE EEVPNCSATE RSQSPVTNCS SLSNPSSVED ETNNCNPYSD LTDNRADHYP SYHKDSNQLA
501: SGNLSNDVIN CSNLGSVGLP PDADSLSDKQ HAGGTTASIP SSDVLKLENK HSPEEQVTED MSTDDGLNSP ALTGRECVPL VGSSKGGLPN TPCKLETLKD
601: GPGKNKRSKS SGKDQENVSG KREGPQDGST SKKRSGERQE EGRVANGFSD RDFEYYVKVI RWLECEGHIE KNFRQKFLTW YSLRATSQEV RIVKIYIDTF
701: LEDPASLAEQ LVDTFSECIS SKRTSVVPAG FCMKLWH

Best Arabidopsis Sequence Match ( AT4G30200.3 )
(BLAST)

001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDT ATTGSTKIRF EDVNATSLTV VLASNEIPSP PNIVHYSIWH RKVPEKDYPE
401: KSTCTLFIPN TRFVVSGLAP ASEYCFKVVS YSGTREMGVD EINVLTRSAE EGANCSSAVE RSVSPLTNCS TLSSNPSSVE AESNNDYIVP KKPSSKNEDN
501: NSPSVDESAA KRMKRTTDSD IVQIEKDVEQ IVLLDDEEQE AVLDKTESET PVVVTTKSLV GNRNSSDASL PITPFRSDEI KNRQARIEIS MKDNCNNGDH
601: SANGGTESGL EHCVKIIRQL ECSGHIDKNF RQKFLTWYSL RATSQEIRVV KIFIDTFIDD PMALAEQLID TFDDRVSIKR SAVGGSGASA VVPSGFCMKL
701: WH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.