Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29247 | Canola | cytosol, nucleus, plastid | 92.1 | 94.43 |
| Bra024456.1-P | Field mustard | nucleus | 90.12 | 84.69 |
| CDY14184 | Canola | cytosol | 55.8 | 44.4 |
| CDY51654 | Canola | cytosol | 55.06 | 41.53 |
| CDX68633 | Canola | nucleus | 59.75 | 38.97 |
| CDY03544 | Canola | nucleus | 59.75 | 38.78 |
| AT2G18880.1 | Thale cress | nucleus | 50.12 | 38.37 |
| CDY28168 | Canola | nucleus | 60.25 | 38.12 |
| CDX72220 | Canola | nucleus | 56.79 | 36.8 |
| CDY47942 | Canola | nucleus | 43.7 | 31.44 |
| CDY42262 | Canola | nucleus | 43.21 | 31.08 |
| CDY11872 | Canola | mitochondrion | 43.21 | 30.76 |
| CDX88618 | Canola | mitochondrion | 43.95 | 30.58 |
| VIT_11s0052g00830.t01 | Wine grape | nucleus | 52.84 | 29.0 |
| GSMUA_Achr3P05080_001 | Banana | cytosol | 44.2 | 27.97 |
| KRH02856 | Soybean | nucleus | 50.62 | 27.82 |
| KRH19033 | Soybean | nucleus | 49.88 | 27.45 |
| GSMUA_Achr9P13690_001 | Banana | plasma membrane | 44.2 | 26.96 |
| GSMUA_Achr4P02170_001 | Banana | cytosol | 42.72 | 26.33 |
| CDX77426 | Canola | cytosol | 21.98 | 26.25 |
| Solyc07g018270.2.1 | Tomato | cytosol | 47.65 | 26.12 |
| GSMUA_Achr5P16400_001 | Banana | cytosol | 37.04 | 26.0 |
| CDX77427 | Canola | nucleus | 35.06 | 23.87 |
| Os02t0152500-01 | Rice | nucleus | 43.21 | 23.36 |
| Zm00001d053875_P001 | Maize | cytosol, plastid | 42.47 | 22.63 |
| KXG29488 | Sorghum | nucleus | 41.98 | 22.34 |
| TraesCS7A01G433000.1 | Wheat | cytosol | 44.94 | 22.25 |
| HORVU7Hr1G099250.1 | Barley | cytosol | 44.44 | 22.22 |
| TraesCS7D01G424600.1 | Wheat | cytosol, nucleus, plasma membrane | 44.94 | 22.2 |
| HORVU6Hr1G022770.6 | Barley | cytosol, nucleus, plastid | 40.74 | 21.97 |
| CDY39555 | Canola | nucleus | 34.81 | 21.79 |
| TraesCS6A01G123400.1 | Wheat | nucleus | 40.25 | 21.73 |
| TraesCS6B01G151600.2 | Wheat | nucleus | 40.0 | 21.6 |
| TraesCS6D01G113600.1 | Wheat | nucleus | 40.0 | 21.6 |
| Zm00001d015293_P015 | Maize | nucleus, plastid | 42.72 | 20.47 |
| PGSC0003DMT400019884 | Potato | cytosol | 12.1 | 13.28 |
Protein Annotations
| EnsemblPlants:CDY59604 | EnsemblPlantsGene:GSBRNA2T00027475001 | InterPro:Oberon_PHD | ncoils:Coil | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF13 |
| PFAM:PF07227 | ProteinID:CDY59604 | ProteinID:CDY59604.1 | SEG:seg | UniParc:UPI0004EF1E16 | UniProt:A0A078J5P6 |
| MapMan:12.3.3.1.2.2 | : | : | : | : | : |
Description
BnaC03g74580DBnaC03g74580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J5P6]
Coordinates
chrLK033787:-:3448..4808
Molecular Weight (calculated)
45498.4 Da
IEP (calculated)
7.985
GRAVY (calculated)
-0.470
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVDEKRKLV HELSKDSDLA FEALQVWTHE EIRQVLCAEL GKERKYKNLT KAQLINSLLK TRDSSTTTKT TKRNSKRQRK NATPTRYVSA ESVNKAKCGS
101: IYCKNLACQA VLRQEDLFCQ RCSCCICHKY DDNKDPSLWL TCGSDPPFPG ESCGLSCHLD CAFKTEKSGL KPSSDVDGCF YCVSCGKTNS LLECWKKQML
201: IAKETRSVDV LCHRLVLAQK LLKGTEKYRK LSETVEEAVK SLETELCGGP LTDLPSAMCR GNVNRLGSAR KVKDLCSSAW KSLQDTPLDE TKVLTRTLQE
301: EEEAAFVSGL STKEEETVPE KVVNVKSSTS CGFGLEDCVK IMRQLECSGY VDKSFRQEFL TWYSLRASAQ EMNVVKTFID AFKDDSVALA EQLVDTFSDC
401: ISRKR
101: IYCKNLACQA VLRQEDLFCQ RCSCCICHKY DDNKDPSLWL TCGSDPPFPG ESCGLSCHLD CAFKTEKSGL KPSSDVDGCF YCVSCGKTNS LLECWKKQML
201: IAKETRSVDV LCHRLVLAQK LLKGTEKYRK LSETVEEAVK SLETELCGGP LTDLPSAMCR GNVNRLGSAR KVKDLCSSAW KSLQDTPLDE TKVLTRTLQE
301: EEEAAFVSGL STKEEETVPE KVVNVKSSTS CGFGLEDCVK IMRQLECSGY VDKSFRQEFL TWYSLRASAQ EMNVVKTFID AFKDDSVALA EQLVDTFSDC
401: ISRKR
001: MASFHKGAAG DSMGSSKMSF DQRRQLVLKL SKESEREFKE VLKDWSCNEI RELLRAESKK DIKYTGLTKD EIITRLFNIV SKKNTRDHEV EEIIPSPKRQ
101: KRDLVTPLAK AKGKGKMYCQ NLACQNKLRE EATFCKRCSC CICFKYDDNK DPSLWLTCNS DSQFDGESCG LSCHLNCAFD SEKSGLKEDT PSSDIDGCFN
201: CVSCGKTNSK IECLKKQLII ANEERRVGVF CYRILLAHKL LKGTKKYIIV SEEVEKAVMH LKNEFGVPIS CLPSKMSRGL VNRLCCAEKV KKHCSSALKE
301: LDGLPLPSTI QGSMKIRIES VLATSVTFDI EAEESFSWGD TNHYRMVYRK VSEKHSSKDL TRELFSTSSH QRFTVMELTP ATEYWFKIVS FSGVEELSVD
401: EFIVSTKTLQ DEEVAAVLLN MSNCNNANKM EKSGSCSFGF EECVNLIRQL ECSGQVKSDF RKKFLTWYCL KATDKEKHVV EIFVDTFKDD KEALAKQLID
501: TFSDCITRKH PEIGGGSESA GVSLILLQD
101: KRDLVTPLAK AKGKGKMYCQ NLACQNKLRE EATFCKRCSC CICFKYDDNK DPSLWLTCNS DSQFDGESCG LSCHLNCAFD SEKSGLKEDT PSSDIDGCFN
201: CVSCGKTNSK IECLKKQLII ANEERRVGVF CYRILLAHKL LKGTKKYIIV SEEVEKAVMH LKNEFGVPIS CLPSKMSRGL VNRLCCAEKV KKHCSSALKE
301: LDGLPLPSTI QGSMKIRIES VLATSVTFDI EAEESFSWGD TNHYRMVYRK VSEKHSSKDL TRELFSTSSH QRFTVMELTP ATEYWFKIVS FSGVEELSVD
401: EFIVSTKTLQ DEEVAAVLLN MSNCNNANKM EKSGSCSFGF EECVNLIRQL ECSGQVKSDF RKKFLTWYCL KATDKEKHVV EIFVDTFKDD KEALAKQLID
501: TFSDCITRKH PEIGGGSESA GVSLILLQD
Arabidopsis Description
VIL3VIN3-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5BPT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.