Factsheet for GSMUA_Achr3P05080_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P02170_001	Banana	cytosol	67.34	65.6
GSMUA_Achr9P13690_001	Banana	plasma membrane	60.78	58.58
GSMUA_Achr5P16400_001	Banana	cytosol	51.09	56.67
CDY14184	Canola	cytosol	36.41	45.78
CDY29247	Canola	cytosol, nucleus, plastid	27.97	45.32
Os02t0152500-01	Rice	nucleus	52.34	44.73
CDY59604	Canola	nucleus	27.97	44.2
Bra024456.1-P	Field mustard	nucleus	28.75	42.69
KXG29488	Sorghum	nucleus	50.31	42.31
Zm00001d053875_P001	Maize	cytosol, plastid	49.69	41.84
CDY51654	Canola	cytosol	35.0	41.71
TraesCS6D01G113600.1	Wheat	nucleus	48.75	41.6
TraesCS6B01G151600.2	Wheat	nucleus	48.28	41.2
TraesCS6A01G123400.1	Wheat	nucleus	48.12	41.07
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	47.81	40.75
VIT_11s0052g00830.t01	Wine grape	nucleus	46.41	40.24
KRH02856	Soybean	nucleus	45.94	39.89
KRH19033	Soybean	nucleus	45.62	39.67
CDX68633	Canola	nucleus	38.12	39.29
CDY03544	Canola	nucleus	37.97	38.94
CDX72220	Canola	nucleus	37.81	38.72
GSMUA_Achr8P33580_001	Banana	plasma membrane	40.0	38.15
CDY28168	Canola	nucleus	38.12	38.12
Bra011173.1-P	Field mustard	nucleus	38.12	38.12
Bra010297.1-P	Field mustard	nucleus	38.12	38.12
Zm00001d015293_P015	Maize	nucleus, plastid	50.0	37.87
Solyc07g018270.2.1	Tomato	cytosol	43.12	37.35
AT2G18880.1	Thale cress	nucleus	30.78	37.24
AT5G57380.1	Thale cress	nucleus	35.94	37.1
Bra024097.1-P	Field mustard	cytosol	37.03	37.09
Bra006824.1-P	Field mustard	nucleus	27.81	36.48
AT4G30200.2	Thale cress	nucleus	40.62	36.41
CDY11872	Canola	mitochondrion	32.34	36.38
GSMUA_Achr10P...	Banana	mitochondrion	11.88	36.02
CDY42262	Canola	nucleus	30.94	35.17
CDY47942	Canola	nucleus	30.62	34.81
Bra020445.1-P	Field mustard	nucleus	30.31	34.7
HORVU7Hr1G099250.1	Barley	cytosol	43.91	34.69
CDX88618	Canola	mitochondrion	31.25	34.36
TraesCS7A01G433000.1	Wheat	cytosol	43.91	34.35
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	43.59	34.02
GSMUA_Achr4P01640_001	Banana	nucleus	33.75	33.59
GSMUA_Achr10P...	Banana	extracellular	11.09	29.83
PGSC0003DMT400019884	Potato	cytosol	15.78	27.37

Protein Annotations

EnsemblPlants:GSMUA_Achr3P05080_001	EnsemblPlants:GSMUA_Achr3T05080_001	EnsemblPlantsGene:GSMUA_Achr3G05080_001	InterPro:Oberon_PHD	PANTHER:PTHR21736	PANTHER:PTHR21736:SF24
PFAM:PF07227	SEG:seg	UniParc:UPI00029624BF	UniProt:M0SBX6	MapMan:12.3.3.1.2.2	:

Description

Putative Protein VERNALIZATION INSENSITIVE 3 [Source:GMGC_GENE;Acc:GSMUA_Achr3G05080_001]

Coordinates

chr3:+:3328490..3332397

Molecular Weight (calculated)

71022.0 Da

IEP (calculated)

5.498

GRAVY (calculated)

-0.411

Length

640 amino acids

Sequence
(BLAST)

001: MDPPFSGFAL DPSKCSKLSI EEKRDLVREL SKWPESASEK LQTWSRRELL EILCTEIGKE RKYTSLTKQK MIEFLFRVVS DKRSEEPAKD GDFAKVASTL
101: VPENTRHCLN SACRAILNME DAFCKRCSCC ICRKYDDNKD PSLWLFCGSE TPPRADSCGL SCHLECALKH ERAGIMKSGQ CTRLDGSYYC THCGKANDLL
201: GCWKKQLMIA KDARRVDVLC YRISLSHKLL GATEKYQSLH EIVDMARKKL EAEVGPIDDS SNMARGIVNR LSVAAEVQKL CALAVDLLDS MHSSSSSANA
301: IVQQAGSVFS SFIKFERISS TSVTVVLELE NNTPLGQELA GFNLWHRKAA ISEYPDKPSF SLLNPEKRLE IAELSPATDY MFKVVAFSNT RDLDTWEVGV
401: KTEGIALENS INLSSEMTAS KPHGQSPKTN GSGSSNPSEG DEYNANTTAC ADLNKLPKID FDDCEKPEIL ETEKSSDEEP NSTVLIDSTD FLENNQASDI
501: QKSENESNTR AVVSDMVILP ATPCGAAREP GSSSEKRGAG KTEGINVKDW SLEGAYEYCV KVIRWLECQG HIETNFRVKF LTWFSLRATL QERRIVSVYV
601: NTLIDDPASL AGQLVDTFSE AICSKRPPTA PTGFCTKLQH

Best Arabidopsis Sequence Match ( AT4G30200.3 )
(BLAST)

001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDT ATTGSTKIRF EDVNATSLTV VLASNEIPSP PNIVHYSIWH RKVPEKDYPE
401: KSTCTLFIPN TRFVVSGLAP ASEYCFKVVS YSGTREMGVD EINVLTRSAE EGANCSSAVE RSVSPLTNCS TLSSNPSSVE AESNNDYIVP KKPSSKNEDN
501: NSPSVDESAA KRMKRTTDSD IVQIEKDVEQ IVLLDDEEQE AVLDKTESET PVVVTTKSLV GNRNSSDASL PITPFRSDEI KNRQARIEIS MKDNCNNGDH
601: SANGGTESGL EHCVKIIRQL ECSGHIDKNF RQKFLTWYSL RATSQEIRVV KIFIDTFIDD PMALAEQLID TFDDRVSIKR SAVGGSGASA VVPSGFCMKL
701: WH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.