Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 8
- golgi 5
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0001g07650.t01 | Wine grape | cytosol | 41.73 | 51.19 |
| Os08t0220600-01 | Rice | cytosol | 45.01 | 47.94 |
| OQU80080 | Sorghum | cytosol | 42.77 | 45.13 |
| Zm00001d024318_P009 | Maize | plasma membrane | 42.92 | 42.86 |
| Zm00001d049370_P002 | Maize | mitochondrion | 42.62 | 41.94 |
| PGSC0003DMT400024218 | Potato | cytosol | 36.51 | 41.18 |
| KRH16856 | Soybean | nucleus | 38.15 | 40.83 |
| GSMUA_Achr3P05080_001 | Banana | cytosol | 38.15 | 40.0 |
| KRH72469 | Soybean | nucleus | 36.21 | 39.9 |
| Solyc04g076400.2.1 | Tomato | cytosol | 36.07 | 39.67 |
| GSMUA_Achr4P02170_001 | Banana | cytosol | 38.75 | 39.57 |
| GSMUA_Achr9P13690_001 | Banana | plasma membrane | 38.0 | 38.4 |
| GSMUA_Achr5P16400_001 | Banana | cytosol | 32.49 | 37.78 |
| GSMUA_Achr10P... | Banana | mitochondrion | 11.18 | 35.55 |
| GSMUA_Achr4P01640_001 | Banana | nucleus | 30.55 | 31.88 |
| GSMUA_Achr10P... | Banana | extracellular | 10.73 | 30.25 |
Protein Annotations
| MapMan:12.3.3.1.2.2 | Gene3D:2.60.40.10 | InterPro:FN3_dom | InterPro:FN3_sf | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr8G33580_001 | EnsemblPlants:GSMUA_Achr8P33580_001 |
| EnsemblPlants:GSMUA_Achr8T33580_001 | InterPro:IPR003961 | InterPro:IPR013783 | InterPro:Ig-like_fold | UniProt:M0TVW0 | InterPro:Oberon_PHD |
| PFAM:PF07227 | PFscan:PS50853 | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF34 | SUPFAM:SSF49265 | TMHMM:TMhelix |
| UniParc:UPI0002962866 | : | : | : | : | : |
Description
Putative Protein VERNALIZATION INSENSITIVE 3 [Source:GMGC_GENE;Acc:GSMUA_Achr8G33580_001]
Coordinates
chr8:+:34587810..34591430
Molecular Weight (calculated)
76157.7 Da
IEP (calculated)
6.571
GRAVY (calculated)
-0.276
Length
671 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLMSHCYIF LVYSFSKLFV EMCITFPVLM IKLELSCSCM SENQTQHLFT SQELTILSFL GFVIDPTKCS HLSLEEKREL VHEISRWADN APEILQSWSR
101: RELLQLICAE MGKERKYTGV TKPKMIEHLL RLKENPLQNS TDLTHETLKT KEEHVDALIC QNPACRATLS LDVGYCKRCS CCICHHYDDN KDPSLWLVCN
201: SDPPYCGNSC GMSCHLKCAL KHEKAGILKT GCSAKLDASF YCVCCGKVNW LIGSWRKQML IAKEARRVDV LCERLSLSYK MLKWTECYKE LQNIVNAAVR
301: ILKKEVGPLD KVSTVMARGI VNRLNCGAEV QKLCVTALEV VDSLLCTSSD NLSGMSMKNS GEIPFSFLIF HIDFEDTSPF SVVVSLHSRD DMFEENIIGC
401: SLWYRKSDDI SYPEEPNCLV LRPDTKIMIS GLSPSTEYHF RVSPFSSTKE LGKWDAKCVT ESLNGNSGQC STRNSDSTYI NEDFLSVPKK EQDLGELPVI
501: IQSDSQKGST NSSENNQAPE LPKFSRANHH KVLPSEDASD NNESHLPPPS NPVPFICSKP VLLEPCKPDI NNTPDSANKK ESAERQYEYC VKVIRWLECE
601: GHMEKEFRVK FLTWFSLKAT AQERRVVNAF IDVLIDEPAS LVAQLMDTFM DGISNKEKPM LHKGFCTRMW H
101: RELLQLICAE MGKERKYTGV TKPKMIEHLL RLKENPLQNS TDLTHETLKT KEEHVDALIC QNPACRATLS LDVGYCKRCS CCICHHYDDN KDPSLWLVCN
201: SDPPYCGNSC GMSCHLKCAL KHEKAGILKT GCSAKLDASF YCVCCGKVNW LIGSWRKQML IAKEARRVDV LCERLSLSYK MLKWTECYKE LQNIVNAAVR
301: ILKKEVGPLD KVSTVMARGI VNRLNCGAEV QKLCVTALEV VDSLLCTSSD NLSGMSMKNS GEIPFSFLIF HIDFEDTSPF SVVVSLHSRD DMFEENIIGC
401: SLWYRKSDDI SYPEEPNCLV LRPDTKIMIS GLSPSTEYHF RVSPFSSTKE LGKWDAKCVT ESLNGNSGQC STRNSDSTYI NEDFLSVPKK EQDLGELPVI
501: IQSDSQKGST NSSENNQAPE LPKFSRANHH KVLPSEDASD NNESHLPPPS NPVPFICSKP VLLEPCKPDI NNTPDSANKK ESAERQYEYC VKVIRWLECE
601: GHMEKEFRVK FLTWFSLKAT AQERRVVNAF IDVLIDEPAS LVAQLMDTFM DGISNKEKPM LHKGFCTRMW H
001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDT ATTGSTKIRF EDVNATSLTV VLASNEIPSP PNIVHYSIWH RKVPEKDYPE
401: KSTCTLFIPN TRFVVSGLAP ASEYCFKVVS YSGTREMGVD EINVLTRSAE EGANCSSAVE RSVSPLTNCS TLSSNPSSVE AESNNDYIVP KKPSSKNEDN
501: NSPSVDESAA KRMKRTTDSD IVQIEKDVEQ IVLLDDEEQE AVLDKTESET PVVVTTKSLV GNRNSSDASL PITPFRSDEI KNRQARIEIS MKDNCNNGDH
601: SANGGTESGL EHCVKIIRQL ECSGHIDKNF RQKFLTWYSL RATSQEIRVV KIFIDTFIDD PMALAEQLID TFDDRVSIKR SAVGGSGASA VVPSGFCMKL
701: WH
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDT ATTGSTKIRF EDVNATSLTV VLASNEIPSP PNIVHYSIWH RKVPEKDYPE
401: KSTCTLFIPN TRFVVSGLAP ASEYCFKVVS YSGTREMGVD EINVLTRSAE EGANCSSAVE RSVSPLTNCS TLSSNPSSVE AESNNDYIVP KKPSSKNEDN
501: NSPSVDESAA KRMKRTTDSD IVQIEKDVEQ IVLLDDEEQE AVLDKTESET PVVVTTKSLV GNRNSSDASL PITPFRSDEI KNRQARIEIS MKDNCNNGDH
601: SANGGTESGL EHCVKIIRQL ECSGHIDKNF RQKFLTWYSL RATSQEIRVV KIFIDTFIDD PMALAEQLID TFDDRVSIKR SAVGGSGASA VVPSGFCMKL
701: WH
Arabidopsis Description
VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.