Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g076400.2.1 | Tomato | cytosol | 89.58 | 87.38 |
| VIT_18s0001g07650.t01 | Wine grape | cytosol | 49.75 | 54.11 |
| KRH16856 | Soybean | nucleus | 45.21 | 42.9 |
| KRH72469 | Soybean | nucleus | 42.69 | 41.71 |
| GSMUA_Achr8P33580_001 | Banana | plasma membrane | 41.18 | 36.51 |
| Os08t0220600-01 | Rice | cytosol | 38.49 | 36.35 |
| OQU80080 | Sorghum | cytosol | 36.97 | 34.59 |
| Zm00001d024318_P009 | Maize | plasma membrane | 38.49 | 34.08 |
| Zm00001d049370_P002 | Maize | mitochondrion | 38.66 | 33.72 |
| PGSC0003DMT400019884 | Potato | cytosol | 12.44 | 20.05 |
| PGSC0003DMT400070566 | Potato | cytosol | 10.92 | 18.68 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400024218 | EnsemblPlantsGene:PGSC0003DMG400009357 | EntrezGene:102603987 | InterPro:Oberon_PHD | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF24 |
| PFAM:PF07227 | PGSC:PGSC0003DMG400009357 | RefSeq:XP_006338049.1 | RefSeq:XP_015166636.1 | SEG:seg | UniParc:UPI0002956CB3 |
| UniProt:M1AJP3 | MapMan:12.3.3.1.2.2 | : | : | : | : |
Description
Protein VERNALIZATION-INSENSITIVE [Source:PGSC_GENE;Acc:PGSC0003DMG400009357]
Coordinates
chr4:+:65065882..65070620
Molecular Weight (calculated)
67597.2 Da
IEP (calculated)
6.691
GRAVY (calculated)
-0.368
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MESALSGLVL DPYKFSQLSM EDKRQLVHEI SQCPEDAPKI LSSLTRKELL EIICAEMGEE RKYSGYTKFK MIDHLLKLVS CKSNTDTGPT FKRQRTQEYQ
101: CQPFVQNDEV NREMESKTQV LLCHNLVCRA TLERDDVFCK RCSCCICHQY DDNKDPSLWL TCDSDSQDEI KPCGLSCHLK CALEHEQSGI LKNCINPNLD
201: GDFYCVSCGK INGLMRTLRK QLMTAKEARR VDVLCLRISL SHKILEKTEK YKGLLKVVEL AAEMLKNEVG PLAQASEKMD RRIVNRLSCG TAVQNLCGSA
301: VGTFDSMFQN QFSSHTKKEE TLMSCRIHFE EQSPSKITIV FEYDDCMLKE LMGFKLWYRK STTNKYPDEA TFIALSPVKK FKLDGLDPLT QYFCKVSFFN
401: KAATLGVQEV NWVTPAVQTS YKSGSDNATI DSTLMHAESM SSTDHKLTTY DPKPCSLNDI ESQANAFPIS PLPKMHIPLP SPLSSAPATP CQTNGSKEVQ
501: LSGIGQVKVS DYEYSVGIIK KLEHEGLIET DFRVKFLTWF SLKATTQERK VVRVFIDTFV DDHSSLAGQL MDTFMDEICW EQKVDLHAIY SKFWH
101: CQPFVQNDEV NREMESKTQV LLCHNLVCRA TLERDDVFCK RCSCCICHQY DDNKDPSLWL TCDSDSQDEI KPCGLSCHLK CALEHEQSGI LKNCINPNLD
201: GDFYCVSCGK INGLMRTLRK QLMTAKEARR VDVLCLRISL SHKILEKTEK YKGLLKVVEL AAEMLKNEVG PLAQASEKMD RRIVNRLSCG TAVQNLCGSA
301: VGTFDSMFQN QFSSHTKKEE TLMSCRIHFE EQSPSKITIV FEYDDCMLKE LMGFKLWYRK STTNKYPDEA TFIALSPVKK FKLDGLDPLT QYFCKVSFFN
401: KAATLGVQEV NWVTPAVQTS YKSGSDNATI DSTLMHAESM SSTDHKLTTY DPKPCSLNDI ESQANAFPIS PLPKMHIPLP SPLSSAPATP CQTNGSKEVQ
501: LSGIGQVKVS DYEYSVGIIK KLEHEGLIET DFRVKFLTWF SLKATTQERK VVRVFIDTFV DDHSSLAGQL MDTFMDEICW EQKVDLHAIY SKFWH
001: MQAASLSKIW RFDGNVGPEN MDSSSFEDNE CIETCKPNVL NVSERRELIH ALSNQPEEAS ELLNSWSRNE IMKIICAEMG KERKYTGLNK PKLIENLLNL
101: VSRPLGETSC SDRRNSRKKE KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC
201: AYCGKDNDLL GCWRKQVKVA KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD
301: KVVSPSESVS GQGDKMTVRV EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD
401: ESELRFTTLK DDGDEAGDQQ SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG
501: KQGGNKRFKS RTVSLNEKPE INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL
601: SKRSSTNGVV PAGICLKLWH
101: VSRPLGETSC SDRRNSRKKE KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC
201: AYCGKDNDLL GCWRKQVKVA KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD
301: KVVSPSESVS GQGDKMTVRV EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD
401: ESELRFTTLK DDGDEAGDQQ SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG
501: KQGGNKRFKS RTVSLNEKPE INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL
601: SKRSSTNGVV PAGICLKLWH
Arabidopsis Description
VIN3VIN3 [Source:UniProtKB/TrEMBL;Acc:A0A178UF19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.