Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400024218 | Potato | cytosol | 87.38 | 89.58 |
| VIT_18s0001g07650.t01 | Wine grape | cytosol | 48.69 | 54.3 |
| KRH16856 | Soybean | nucleus | 43.77 | 42.58 |
| KRH72469 | Soybean | nucleus | 41.31 | 41.38 |
| Os08t0220600-01 | Rice | cytosol | 37.38 | 36.19 |
| GSMUA_Achr8P33580_001 | Banana | plasma membrane | 39.67 | 36.07 |
| OQU80080 | Sorghum | cytosol | 35.74 | 34.28 |
| Zm00001d024318_P009 | Maize | plasma membrane | 37.05 | 33.63 |
| Zm00001d049370_P002 | Maize | mitochondrion | 37.54 | 33.58 |
| Solyc07g018270.2.1 | Tomato | cytosol | 36.39 | 30.04 |
| Solyc05g018390.2.1 | Tomato | nucleus | 28.85 | 27.2 |
Protein Annotations
| EnsemblPlants:Solyc04g076400.2.1 | EnsemblPlantsGene:Solyc04g076400.2 | InterPro:Oberon_PHD | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF24 | PFAM:PF07227 |
| UniParc:UPI0002765C7A | UniProt:K4BU78 | MapMan:12.3.3.1.2.2 | : | : | : |
Description
No Description!
Coordinates
chr4:+:61307538..61311947
Molecular Weight (calculated)
69140.1 Da
IEP (calculated)
6.896
GRAVY (calculated)
-0.389
Length
610 amino acids
Sequence
(BLAST)
(BLAST)
001: MNEKGIGQWK FFSSAMESAL SGLVLDPYKF SQLSMEDRRQ LVHEISQCPE DAPKILSSLT RKELLEIICA EMGEERKYSG YTKFKMIDHL LKLVSCKSNT
101: DTGPTFKRQR TQEYQCQPSV QNDEVNREMG SKTQVLLCHN LVCRASLERD DVFCKRCSCC ICHQYDDNKD PSLWLTCDSD SQDETKPCGL SCHLKCALEH
201: EQSGILKNCI NPKLDGDFYC VSCGKINGIM RTLRKQLMTA KEARRVDVLC LRISLSHKIL EKTEKYKGLL KVVELAAEML KNEIGPLAQA SEKMDRRIVN
301: RLSCGTAVQN LCGSAVGTFD SMFQNQFSSH TKMEETPMSC RIHLEEQSPS KVTIVFEYDD CVLKELMGFK LWYRKSTTNK YPDEATFIAL SPVKKFKLDG
401: LDPLTQYFCK VSFFNKAATL GVQEVNWVTP PVQTSYKSGS DNATIDTTLM HAESMSSTDH KLTTYDPKPC SLNDIESQAN ASPVSPLPKM HIPLASPLSS
501: APATPCQTNG SKEVQLRGIG QVKVSDYEYS VGIIKKLEHE GLIETDFRVK FLTWFSLKAT TQERKVVRVF IDTFVDDHSS LAEQLMDTFM DEICMEQKVD
601: LHAIYSKFWH
101: DTGPTFKRQR TQEYQCQPSV QNDEVNREMG SKTQVLLCHN LVCRASLERD DVFCKRCSCC ICHQYDDNKD PSLWLTCDSD SQDETKPCGL SCHLKCALEH
201: EQSGILKNCI NPKLDGDFYC VSCGKINGIM RTLRKQLMTA KEARRVDVLC LRISLSHKIL EKTEKYKGLL KVVELAAEML KNEIGPLAQA SEKMDRRIVN
301: RLSCGTAVQN LCGSAVGTFD SMFQNQFSSH TKMEETPMSC RIHLEEQSPS KVTIVFEYDD CVLKELMGFK LWYRKSTTNK YPDEATFIAL SPVKKFKLDG
401: LDPLTQYFCK VSFFNKAATL GVQEVNWVTP PVQTSYKSGS DNATIDTTLM HAESMSSTDH KLTTYDPKPC SLNDIESQAN ASPVSPLPKM HIPLASPLSS
501: APATPCQTNG SKEVQLRGIG QVKVSDYEYS VGIIKKLEHE GLIETDFRVK FLTWFSLKAT TQERKVVRVF IDTFVDDHSS LAEQLMDTFM DEICMEQKVD
601: LHAIYSKFWH
001: MQAASLSKIW RFDGNVGPEN MDSSSFEDNE CIETCKPNVL NVSERRELIH ALSNQPEEAS ELLNSWSRNE IMKIICAEMG KERKYTGLNK PKLIENLLNL
101: VSRPLGETSC SDRRNSRKKE KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC
201: AYCGKDNDLL GCWRKQVKVA KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD
301: KVVSPSESVS GQGDKMTVRV EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD
401: ESELRFTTLK DDGDEAGDQQ SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG
501: KQGGNKRFKS RTVSLNEKPE INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL
601: SKRSSTNGVV PAGICLKLWH
101: VSRPLGETSC SDRRNSRKKE KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC
201: AYCGKDNDLL GCWRKQVKVA KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD
301: KVVSPSESVS GQGDKMTVRV EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD
401: ESELRFTTLK DDGDEAGDQQ SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG
501: KQGGNKRFKS RTVSLNEKPE INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL
601: SKRSSTNGVV PAGICLKLWH
Arabidopsis Description
VIN3VIN3 [Source:UniProtKB/TrEMBL;Acc:A0A178UF19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.